RNA id: TU2313928


Basic Information

Item Value
RNA id TU2313928
length 808
RNA type TUCP
GC content 0.47
exon number 5
gene id LOC100136595
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 33800216 ~ 33815643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTTGGTCTAAAGCTTGAAGTACCTCAACTCATTCCATCTTCGTCCACGAAAACAACCAATCACGGGACCATGGTTATGATGAAGCTCTCTGCCCTCCTCATTGCCTATTTCCTGGTCATTTGTCAGATGTACAGCTCACATGCAGCTCCAGCCAGAGTCCATGACAGACCAAGTCACGCTAACTGACTATGAAGCCCGAAGGCTACTCAACGCCATCGTCAAGGAGTTTGTTCAAATGACTTCAGAGGAACTGGAGCAACAAGCCAATGAAGGAAATAGCGTTACAGCACAGAAGCGTGCGTGCAATACTGCCACATGTGTCACCCACCGCCTGGCTGACTTCCTGAACagatcaggaggaatgggcaacaGTAACTTCGTCCCCACCAACGTGGGCGCCAAGGCGTTCGGACGACGAAGGAGAGACAGCCCCATGACAGCACCTATGTGAATGTGTCAACAGGCCTCAGGGATTTGAGTATGAGCCCTTTAGTGAGACAACAGTACATCCTGTCCTGAACCAACTACAGACATCTGGGAATGACAACGCTTCACTGTTTTAAAAAAACAACCTTCAAACTACCAAACTGATTTCCTGCATACCTCTTGCATACTCTGTGTTACCGATATTCATTTTTGCTCTATAACCATGAGGCGATACAACAAACTAGAAAAGATTGCAACAAAAATTAAAGAACTAACTTCTGTTATGTCAATTTTCACCAGATCATTACCCTGTACAAGCCAGTTGGTTCTGTCCCGTTTTGGCTTAGAGCACATGTACAGTTTGACCCTgactccccacc

Function

GO:

id name namespace
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0048240 sperm capacitation biological_process
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function
GO:0031716 calcitonin receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2313856 lncRNA downstream 124501 33675390 ~ 33675715 (-) True G2023023
TU2313850 lncRNA downstream 132673 33667334 ~ 33667543 (-) True G2023017
TU2313846 lncRNA downstream 136080 33663810 ~ 33664136 (-) True G2023013
TU2313837 lncRNA downstream 146898 33652761 ~ 33653318 (-) False G2023005
TU2313838 lncRNA downstream 146898 33652761 ~ 33653318 (-) True G2023005
TU2313943 lncRNA upstream 10564 33814888 ~ 33815882 (-) True G2023105
TU2313926 lncRNA upstream 132202 33936526 ~ 33936874 (-) True G2023088
TU2313924 lncRNA upstream 133506 33937830 ~ 33939712 (-) True G2023086
TU2313923 lncRNA upstream 136201 33940525 ~ 33941420 (-) True G2023085
TU2314018 lncRNA upstream 173314 33977638 ~ 33990652 (-) True G2023172
XM_036963622.1 mRNA downstream 411271 33386852 ~ 33388945 (-) True LOC118944422
XM_021586464.2 mRNA downstream 631988 33159342 ~ 33168228 (-) True nucb2a
XM_021586463.2 mRNA downstream 631989 33159342 ~ 33168227 (-) False nucb2a
XM_021586461.2 mRNA downstream 873949 32900561 ~ 32926267 (-) True LOC110506670
XM_036963163.1 mRNA downstream 969101 32829842 ~ 32831115 (-) False LOC110506665
XM_036963254.1 mRNA upstream 41686 33846010 ~ 33927988 (-) False LOC110506676
XM_036963255.1 mRNA upstream 41686 33846010 ~ 33927989 (-) True LOC110506676
XR_002471018.2 mRNA upstream 310185 34114509 ~ 34118233 (-) False LOC110506684
XR_005039791.1 mRNA upstream 310185 34114509 ~ 34118233 (-) False LOC110506684
XM_021586477.2 mRNA upstream 348352 34152676 ~ 34184090 (-) False LOC110506685
TU2312761 other downstream 921445 32875255 ~ 32878771 (-) True G2022042
TU2312670 other downstream 965735 32831627 ~ 32834481 (-) True G2021975
TU2312677 other downstream 981236 32810623 ~ 32818980 (-) True G2021979
TU2312650 other downstream 1083303 32716126 ~ 32716913 (-) True G2021956
TU2312501 other downstream 1214857 32528233 ~ 32585359 (-) True LOC110506653
TU2314697 other upstream 696529 34500853 ~ 34502486 (-) True LOC110506691
TU2315702 other upstream 1072098 34876422 ~ 34928381 (-) True G2024673
TU2316001 other upstream 1591750 35396074 ~ 35399967 (-) True G2024949
TU2316121 other upstream 1691463 35495787 ~ 35497803 (-) True G2025061
TU2316067 other upstream 1743936 35548260 ~ 35548757 (-) True LOC110506721

Expression Profile