RNA id: XM_021586477.2


Basic Information

Item Value
RNA id XM_021586477.2
length 1798
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110506685
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 34152676 ~ 34184095 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTCCCTTGCCCTAGGGGTAATTAGTGTCCTTGGAGTTAAATAAGCTAATACTTAGACACCTCTGGCACAAGCAATTATGTTTGTGTATTGAATAATTGATTCAAAGAGGGGGGAAGGGCTGCTAATCAGATCTGAGCATAATGAATTGATTTAATTAACAGGGGAATCTGAGGGTCTCTGGGAACTGCGCGCACTTATTCCGTAGCAGGAGCGGGCGCAGCACATAAATTGGAGAGAAAGGCAGTGTGAGTATGCTTTTAGCAGTTGTCAGGTCTGGAATTGGATTTCTTGAATATAGTTACAGTTTCGGAGCAAATGAGAACGGGGAGAGAATTTCACAGCGCGGAGGGCTCTGTCGTCTAGTCTAAGCGTTTGATACGAGTACAGTTAGATTCAGGAGATTTTACTGCTTTCCATTCTTTGTTTGCGTATGGAATTTACGAAGACCAACCAACATTGTTTTACGGGTGTAAATTGCAGTTTAGTCCGGAGAGGCAATTTTCTGTGTTTAGTAAGAGTAAACTGAGCGCGGACACTTTCTTTCACGATACATTATATTATCAATTGCCTAGAATAACATTCAAACCCGCGTTCATGTTACAAAGGTTTCCGTTACTAACGCAGATACAAGCCAAGCGTTCGTGAATTTTCAGCTTGCTGAACACATAAGGACGATTCGGTCGCTGTTTCAAAGCTCATTTCTAAGAGAAGCCTTGCGCACACCGACTAGTGAAGCCTGCTGGAGCCGAGAACGGATCGTCTGGAGCCGGACTCCTCGTTCCTCAGGACGATGGTGTTGGACAAGGAAGAGAGTGTGCCGATGCTCTCCGTCCAGCCCAAAGGGAAACAGAAGGGGTGCGCTGGCTGCAATCGCAAGATTAAAGACCGCTACCTGCTCAAGGCCCTGGACAAATACTGGCACGAGGACTGTCTGAAATGTGCCTGCTGCGACTGTCGCCTGGGGGAGGTGGGCTCCACCCTCTACACGAAAGCCAACCTCATCCTCTGTCGCAGGGACTACCTGAGgctCTTTGGTACAACAGGGAACTGCGCTGCCTGCAGTAAACTGATCCCAGCCTTTGAAATGGTGATGAGAGCCAGAGATAATGTTTACCATTTGGACTGTTTTGCCTGTCAGCTTTGTAACCAGAGGTTTTGTGTGGGGGACAAGTTTTTCCTTAAGAACAACATGATTCTGTGTCAGATGGACTATGAGGAGGGCCAGCTGAACGGCAGCTTTGAGACGCAGGTTCAATAGCCGGGCCCAGTGGCAGCGACCAGGAACCCTCGGCCCGCCGCACTTACACATGATGCCATGGATGTTCTGCTGCACTTGGAAAGAGGAGCGTCTGTCTGCTTGCCTGCAGTACTTTTTAAATAGCCCTTTATCAGTCCATAAGGACTCTATTGTAAATGTACTACTTTTTgcccctccccttcccatcctTGCCCCTCCCCTTCCCACCCCAACACTGAGCAGTTACAAGTTTTGATGTACAGTTGTGCCTGCTTAGCTGAGCACTGTATTGCTTGTATGTTTTTGTGACGTTTGTTTTGGGTTTGTTTATTCTTTTCCCCTTTCGGGAACGTTTCCTTGGAGGGTATGTACAGTctgttttctctgtatatataaaCTGGAACATTTATTTTATGAAATGTAATGCAATTTTATTACTAGTGTGAATTAAAGATTCTTAAATGTTCATAGTGAGTTTTTTTGTCCGTATACCAAAACCAAAGTTGTTTGAGGAGGCTGGCCCATGTGTTGATATATCATCATCTCAAACCACagagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2314150 lncRNA downstream 17384 34134939 ~ 34135292 (-) True G2023280
TU2314143 lncRNA downstream 24094 34128308 ~ 34128582 (-) True G2023273
TU2314113 lncRNA downstream 34407 34109965 ~ 34118269 (-) True LOC110506684
TU2314084 lncRNA downstream 88166 34051298 ~ 34064510 (-) False G2023221
TU2314085 lncRNA downstream 88166 34051298 ~ 34064510 (-) True G2023221
TU2314352 lncRNA upstream 60794 34244884 ~ 34247712 (-) True G2023453
TU2314413 lncRNA upstream 154458 34338548 ~ 34338803 (-) True G2023513
TU2314434 lncRNA upstream 174629 34358719 ~ 34358947 (-) True G2023532
TU2314667 lncRNA upstream 199403 34383493 ~ 34383809 (-) True G2023749
TU2314646 lncRNA upstream 205487 34389577 ~ 34390359 (-) True LOC110506687
XR_002471018.2 mRNA downstream 34443 34114509 ~ 34118233 (-) False LOC110506684
XR_005039791.1 mRNA downstream 34443 34114509 ~ 34118233 (-) False LOC110506684
XM_036963255.1 mRNA downstream 224687 33846010 ~ 33927989 (-) True LOC110506676
XM_036963254.1 mRNA downstream 224688 33846010 ~ 33927988 (-) False LOC110506676
NM_001124587.1 mRNA downstream 337033 33801334 ~ 33815643 (-) False LOC100136595
XM_036963623.1 mRNA upstream 169683 34353773 ~ 34358034 (-) True LOC110506117
XM_021586478.2 mRNA upstream 192096 34376186 ~ 34390655 (-) True LOC110506686
XM_036963335.1 mRNA upstream 205559 34389649 ~ 34412220 (-) False LOC110506687
XM_036963338.1 mRNA upstream 205559 34389649 ~ 34417990 (-) False LOC110506687
XM_036963333.1 mRNA upstream 205559 34389649 ~ 34417991 (-) False LOC110506687
TU2313928 other downstream 348352 33800216 ~ 33804324 (-) True LOC100136595
TU2312761 other downstream 1273905 32875255 ~ 32878771 (-) True G2022042
TU2312670 other downstream 1318195 32831627 ~ 32834481 (-) True G2021975
TU2312677 other downstream 1333696 32810623 ~ 32818980 (-) True G2021979
TU2312650 other downstream 1435763 32716126 ~ 32716913 (-) True G2021956
TU2314697 other upstream 316763 34500853 ~ 34502486 (-) True LOC110506691
TU2315702 other upstream 692332 34876422 ~ 34928381 (-) True G2024673
TU2316001 other upstream 1211984 35396074 ~ 35399967 (-) True G2024949
TU2316121 other upstream 1311697 35495787 ~ 35497803 (-) True G2025061
TU2316067 other upstream 1364170 35548260 ~ 35548757 (-) True LOC110506721

Expression Profile