RNA id: TU2314352


Basic Information

Item Value
RNA id TU2314352
length 515
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2023453
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 34244884 ~ 34247712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatagaacaatatacaaaaacaagaaacgtgaaaaaccgaaaacagccctatctggtgtaacaaacacaaagacaggaacaatcacccacaaaacccaacacaaaacaggctacctaaatatggctcccaatcagagacaatgactaacacctgcctctgattgagaaccatatcaggcccaaacacagaaacagacaaacaagacatccaacatagaatgcccactcagatcacaccctgaccaaacaaaacctagaaacatacaaagcaaactatggtcagggtgtgacaagtgcACATTTTACCTTGATGTTGACTCAATAGAAAAGAGAGGACTGTTATTCCCTGAGCAGCCTTCATCCGATGTCCCTTCACAGCCTgaaatagtatactatagtagaaTAGAAACTCCTGTACTCTGAAAACACAGGATATTTGGAGAAATCGTGCTACTGTACACCACAACAGATCCTGTTATTTGTGTTAGGGTGGTTGGAGTTCTATATTAACAgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2314150 lncRNA downstream 109592 34134939 ~ 34135292 (-) True G2023280
TU2314143 lncRNA downstream 116302 34128308 ~ 34128582 (-) True G2023273
TU2314113 lncRNA downstream 126615 34109965 ~ 34118269 (-) True LOC110506684
TU2314084 lncRNA downstream 180374 34051298 ~ 34064510 (-) False G2023221
TU2314085 lncRNA downstream 180374 34051298 ~ 34064510 (-) True G2023221
TU2314413 lncRNA upstream 90836 34338548 ~ 34338803 (-) True G2023513
TU2314434 lncRNA upstream 111007 34358719 ~ 34358947 (-) True G2023532
TU2314667 lncRNA upstream 135781 34383493 ~ 34383809 (-) True G2023749
TU2314646 lncRNA upstream 141865 34389577 ~ 34390359 (-) True LOC110506687
TU2314677 lncRNA upstream 164793 34412505 ~ 34412714 (-) True G2023759
XM_036964015.1 mRNA downstream 60789 34152676 ~ 34184095 (-) True LOC110506685
XM_021586477.2 mRNA downstream 60794 34152676 ~ 34184090 (-) False LOC110506685
XR_002471018.2 mRNA downstream 126651 34114509 ~ 34118233 (-) False LOC110506684
XR_005039791.1 mRNA downstream 126651 34114509 ~ 34118233 (-) False LOC110506684
XM_036963255.1 mRNA downstream 316895 33846010 ~ 33927989 (-) True LOC110506676
XM_036963623.1 mRNA upstream 106061 34353773 ~ 34358034 (-) True LOC110506117
XM_021586478.2 mRNA upstream 128474 34376186 ~ 34390655 (-) True LOC110506686
XM_036963335.1 mRNA upstream 141937 34389649 ~ 34412220 (-) False LOC110506687
XM_036963338.1 mRNA upstream 141937 34389649 ~ 34417990 (-) False LOC110506687
XM_036963333.1 mRNA upstream 141937 34389649 ~ 34417991 (-) False LOC110506687
TU2313928 other downstream 440560 33800216 ~ 33804324 (-) True LOC100136595
TU2312761 other downstream 1366113 32875255 ~ 32878771 (-) True G2022042
TU2312670 other downstream 1410403 32831627 ~ 32834481 (-) True G2021975
TU2312677 other downstream 1425904 32810623 ~ 32818980 (-) True G2021979
TU2312650 other downstream 1527971 32716126 ~ 32716913 (-) True G2021956
TU2314697 other upstream 253141 34500853 ~ 34502486 (-) True LOC110506691
TU2315702 other upstream 628710 34876422 ~ 34928381 (-) True G2024673
TU2316001 other upstream 1148362 35396074 ~ 35399967 (-) True G2024949
TU2316121 other upstream 1248075 35495787 ~ 35497803 (-) True G2025061
TU2316067 other upstream 1300548 35548260 ~ 35548757 (-) True LOC110506721

Expression Profile