RNA id: TU2314677



Basic Information


Item Value
RNA id TU2314677
length 210
lncRNA type intronic
GC content 0.46
exon number 1
gene id G2023759
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 34412505 ~ 34412714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttgttatcaactagcctacctggttaaataaaggtgaaataaaatgtttaaaaaactaaatatccttgatgacaacctactccagagcgctcaggacctcagaatggggcgaaggttcacacaatgactctatgcacacagccaagacaatgcaggagtggcgtcaggacaagtttctgaatggccttgagtagcccagccagagcccg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2314646 lncRNA downstream 22146 34389577 ~ 34390359 (-) True LOC110506687
TU2314667 lncRNA downstream 28696 34383493 ~ 34383809 (-) True G2023749
TU2314434 lncRNA downstream 53558 34358719 ~ 34358947 (-) True G2023532
TU2314413 lncRNA downstream 73702 34338548 ~ 34338803 (-) True G2023513
TU2314352 lncRNA downstream 164793 34244884 ~ 34247712 (-) True G2023453
TU2314679 lncRNA upstream 1716 34414430 ~ 34414728 (-) True G2023761
TU2314681 lncRNA upstream 3689 34416403 ~ 34416645 (-) True G2023763
TU2314698 lncRNA upstream 90352 34503066 ~ 34503345 (-) True G2023780
TU2314699 lncRNA upstream 90785 34503499 ~ 34503712 (-) True G2023781
TU2314702 lncRNA upstream 94518 34507232 ~ 34507502 (-) True G2023784
XM_036963335.1 mRNA downstream 285 34389649 ~ 34412220 (-) False LOC110506687
XM_021586478.2 mRNA downstream 21850 34376186 ~ 34390655 (-) True LOC110506686
XM_036963623.1 mRNA downstream 54471 34353773 ~ 34358034 (-) True LOC110506117
XM_036964015.1 mRNA downstream 228410 34152676 ~ 34184095 (-) True LOC110506685
XM_021586477.2 mRNA downstream 228415 34152676 ~ 34184090 (-) False LOC110506685
XM_021586483.2 mRNA upstream 5487 34418201 ~ 34481567 (-) False LOC110506688
XM_036963341.1 mRNA upstream 5487 34418201 ~ 34481567 (-) False LOC110506688
XM_036963342.1 mRNA upstream 5487 34418201 ~ 34485966 (-) False LOC110506688
XM_036963340.1 mRNA upstream 5487 34418201 ~ 34485977 (-) False LOC110506688
XM_036963339.1 mRNA upstream 5487 34418201 ~ 34491809 (-) False LOC110506688
TU2313928 other downstream 608181 33800216 ~ 33804324 (-) True LOC100136595
TU2312761 other downstream 1533734 32875255 ~ 32878771 (-) True G2022042
TU2312670 other downstream 1578024 32831627 ~ 32834481 (-) True G2021975
TU2312677 other downstream 1593525 32810623 ~ 32818980 (-) True G2021979
TU2312650 other downstream 1695592 32716126 ~ 32716913 (-) True G2021956
TU2314697 other upstream 88139 34500853 ~ 34502486 (-) True LOC110506691
TU2315702 other upstream 463708 34876422 ~ 34928381 (-) True G2024673
TU2316001 other upstream 983360 35396074 ~ 35399967 (-) True G2024949
TU2316121 other upstream 1083073 35495787 ~ 35497803 (-) True G2025061
TU2316067 other upstream 1135546 35548260 ~ 35548757 (-) True LOC110506721

Expression Profile