RNA id: TU2314698


Basic Information

Item Value
RNA id TU2314698
length 280
lncRNA type intronic
GC content 0.47
exon number 1
gene id G2023780
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 34503066 ~ 34503345 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGAAGGGGCCACCATGTTTTCACCCCCCCAAACACTGTTATCCCAGCCTATTTGTGGCTAAGCCACAGATCCCATCTCCTGCTTTCCCCACCAATAGACTAAACAAAAAAGAGCTATGGGGAGAGACAGTTTGCTCAAGTCAgtcaggagatatgagagaggtTGTTCCATGGTAGATAATGTCCTTGCGTTACATCACTCCACTGACATCTGCTCTCCTGGCCTTAGTCTTATTGTGGTAGAGTGCTCGTctttaagtcgctctggataagaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2314681 lncRNA downstream 86421 34416403 ~ 34416645 (-) True G2023763
TU2314679 lncRNA downstream 88338 34414430 ~ 34414728 (-) True G2023761
TU2314677 lncRNA downstream 90352 34412505 ~ 34412714 (-) True G2023759
TU2314646 lncRNA downstream 112707 34389577 ~ 34390359 (-) True LOC110506687
TU2314667 lncRNA downstream 119257 34383493 ~ 34383809 (-) True G2023749
TU2314699 lncRNA upstream 154 34503499 ~ 34503712 (-) True G2023781
TU2314702 lncRNA upstream 3887 34507232 ~ 34507502 (-) True G2023784
TU2314703 lncRNA upstream 9661 34513006 ~ 34513258 (-) True G2023785
TU2314705 lncRNA upstream 10385 34513730 ~ 34513937 (-) True G2023787
TU2314707 lncRNA upstream 11292 34514637 ~ 34514965 (-) True G2023789
XM_036963343.1 mRNA downstream 4154 34492474 ~ 34498912 (-) True LOC110506690
XM_021586491.2 mRNA downstream 4506 34492474 ~ 34498560 (-) False LOC110506690
XM_036963344.1 mRNA downstream 4769 34492474 ~ 34498297 (-) False LOC110506690
XM_021586486.2 mRNA downstream 10966 34418201 ~ 34492100 (-) True LOC110506688
XM_036963339.1 mRNA downstream 11257 34418201 ~ 34491809 (-) False LOC110506688
XM_036964405.1 mRNA upstream 21652 34524997 ~ 34529975 (-) False LOC110506692
XM_036964404.1 mRNA upstream 21652 34524997 ~ 34530228 (-) False LOC110506692
XM_021586497.2 mRNA upstream 27243 34530588 ~ 34583090 (-) False LOC110506693
XM_021586499.2 mRNA upstream 27243 34530588 ~ 34583090 (-) False LOC110506693
XM_021586500.2 mRNA upstream 27243 34530588 ~ 34583090 (-) False LOC110506693
TU2314697 other downstream 580 34500853 ~ 34502486 (-) True LOC110506691
TU2313928 other downstream 698742 33800216 ~ 33804324 (-) True LOC100136595
TU2312761 other downstream 1624295 32875255 ~ 32878771 (-) True G2022042
TU2312670 other downstream 1668585 32831627 ~ 32834481 (-) True G2021975
TU2312677 other downstream 1684086 32810623 ~ 32818980 (-) True G2021979
TU2315702 other upstream 373077 34876422 ~ 34928381 (-) True G2024673
TU2316001 other upstream 892729 35396074 ~ 35399967 (-) True G2024949
TU2316121 other upstream 992442 35495787 ~ 35497803 (-) True G2025061
TU2316067 other upstream 1044915 35548260 ~ 35548757 (-) True LOC110506721
TU2316868 other upstream 1839811 36343156 ~ 36343434 (-) True G2025757

Expression Profile