RNA id: TU2316121


Basic Information

Item Value
RNA id TU2316121
length 1236
RNA type TUCP
GC content 0.55
exon number 2
gene id G2025061
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 35495787 ~ 35497803 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagctacagccctcccaccagcatggtactgtctaacttagtgcccagccccagccctcctaccagcatggtactgtgttactttgtgcccagccccagccctcccaccagcatggtactgtgttacttagtgcccagccacagccctcctaccagcatggtactgtgttacttagtgcccagccacagccctcccaccagcatggtactgtgttacttagtgctcagccccagccctcctaccagcatggtactgtgttacttagtgcccagccacagccctcctaccagcatggtactgtgttacttagtgcccagccacagccctcctatcagcatggtactgtgttaattagtgcccagccctcctaccagcatggtactgtgttacttagtgcccaaacccagccctcctaccagcatggtgctgggttacttagtgcccagccacagccctcctaccagcatggtactgtgttacttagtgcccagccacagccctcctatcagcatggtactgtgtttattagtgcccagccctcctaccagcatggtactgtgttacttagtgtcCAGCCCTCCTacaagcatggtactgtgttacttagtgcccagccacagccctcctacagcatggtactgtgttacttagtgcccagccccagccctaatACCAGCacggtactgtgttacttagtgcccagccacagccctcctaccagcatggtactgtgttacttagtgcccaaacccagccttcctaccagcatggtactgtgttacttagtgcccaaatccagccctcctaccagcatggtactgtgttacttagtgcccagccacagccctcccaccagcctggtactgtgttacttagtgcccagccccagccctcctaccagcatggtactgtgttacttagtgcccagccttCCTACCAGCAtagtactgtgttacttagtgcccagccacagccttcctaccagcatggtactgtgttacttagtgcccagccctcctaccagcatggtactgtgtaacTTAGTGCCCaaaacccagccctcctaccagcatggtactgtgttacttagtgcccaaccccagccctcctaccagcatggtactgtgttacttagtgcccagccccagccctcctaccagcatggtactgtgttacttcgTTCCCAGCCACAGCGCTCCtcccagcatggtactgtgttacttagtgcccagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2316068 lncRNA downstream 89111 35406146 ~ 35406676 (-) True G2025008
TU2316065 lncRNA downstream 92028 35401512 ~ 35403759 (-) False LOC110506721
TU2316066 lncRNA downstream 92028 35401512 ~ 35403759 (-) False LOC110506721
TU2315853 lncRNA downstream 404713 35090849 ~ 35091074 (-) True G2024809
TU2315845 lncRNA downstream 422867 35072542 ~ 35072920 (-) True G2024801
TU2316145 lncRNA upstream 39131 35536934 ~ 35537147 (-) True G2025079
TU2316146 lncRNA upstream 39436 35537239 ~ 35537581 (-) True G2025080
TU2316152 lncRNA upstream 62021 35559824 ~ 35560047 (-) True G2025086
TU2316162 lncRNA upstream 110378 35608181 ~ 35609198 (-) True G2025095
TU2316234 lncRNA upstream 235085 35732888 ~ 35739367 (-) True G2025159
XM_021586531.2 mRNA downstream 446101 35038585 ~ 35049686 (-) True pepd
XM_036963828.1 mRNA downstream 448112 35038585 ~ 35047675 (-) False pepd
XM_036963873.1 mRNA downstream 590262 34899785 ~ 34905525 (-) True LOC110506712
XM_036964510.1 mRNA downstream 616670 34866931 ~ 34879117 (-) True LOC110506710
XM_036964511.1 mRNA downstream 617119 34866931 ~ 34878668 (-) False LOC110506710
XM_021586544.2 mRNA upstream 64612 35562415 ~ 35606081 (-) False LOC110506723
XM_021586545.2 mRNA upstream 64612 35562415 ~ 35607261 (-) False LOC110506723
XM_021586543.2 mRNA upstream 64612 35562415 ~ 35607286 (-) True LOC110506723
XM_021586548.2 mRNA upstream 143071 35640874 ~ 35680665 (-) True LOC110506725
XM_021586550.2 mRNA upstream 183279 35681082 ~ 35684607 (-) False sdr42e1
TU2316001 other downstream 95820 35396074 ~ 35399967 (-) True G2024949
TU2315702 other downstream 567406 34876422 ~ 34928381 (-) True G2024673
TU2314697 other downstream 993301 34500853 ~ 34502486 (-) True LOC110506691
TU2313928 other downstream 1691463 33800216 ~ 33804324 (-) True LOC100136595
TU2312761 other downstream 2617016 32875255 ~ 32878771 (-) True G2022042
TU2316067 other upstream 50457 35548260 ~ 35548757 (-) True LOC110506721
TU2316868 other upstream 845353 36343156 ~ 36343434 (-) True G2025757
TU2317552 other upstream 1336930 36834733 ~ 36876103 (-) False LOC110506740
TU2317556 other upstream 1336930 36834733 ~ 36875996 (-) True LOC110506740
TU2318224 other upstream 1922608 37420411 ~ 37421037 (-) True G2026993

Expression Profile