RNA id: XM_021586499.2


Basic Information

Item Value
RNA id XM_021586499.2
length 8533
RNA type mRNA
GC content 0.45
exon number 23
gene id LOC110506693
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 34530588 ~ 34583094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttccaattcttcccaaaggtgtttcatggggttgaggtcagggctctgtgcaggccagtcaagttcttccataccaatctcgacaaataatttctgtatggacctcgctttgtgcacaggggcattgtcatgttgaaacaagAAAGGACCTTCCCCACACTGTtcccacaaatttggaagcatagaatcgtctagaatgtcattgtatgctgtagtgttaagattagCCTTCATTCggactaaggggcctagcccaaaccattattcctcctccaccaaacttagTTGAATTGGGACAGGTAACATTCTCCTGTCAGATGTTGAAGCGTGATTGATCACTTCAgaaaacgcgtttccactgctttagagtccaatggcggcgagctttaagtgaaaactgtaactaggccactcaggaacattaaatGTTGTCTTGgtcagcaactccagtgtatatttggcattgtgttttaggttattgtcctgctgaaaggtgaatttttctcaagtgtaattagtaacttcaccatgctcgaTGGGATATTCAACATCTgtttagtattttattttttaaatatttttttttacccatctaactACAAATCGATGGATGCCCTACATAAGGCATTGGACAACCTCCCTGGGCTTTGAATTTGCTTTTTGAAATTCACTCCTCGAttcagggaccttacagatacttGTAAGTGTTGGGACGGAGATGAGGTTGTCATAAAGAAATCATATTAGACACTATTATTGCACGTAGAATGAGTCCATGTGACTTgttgagcacatttttactcctgaacttatggTAAGCCTCaataacaaaggtgttgaatacttattgactcaagactaTTCAACTTTTCAATTCTATtagtttgtaaaaatgtctaaaaacataattccactttgacatgaaaGGGTATTGTATGAAGGGCAGTAACAAAAAATCTAAAtggaatacattttaaattcaggctgtaacacaaaaaaagagtcaaggggtgtgaatacttaaggcAGTTTATATATTTTCTTAGAGTCCAACCTGTATGTATCTGTTGGTGTTATGCCTAATTTGTACTATAGTTTGGGTGCTTTGATGTGATTGGAGTGATTTGTATTTGGCCTTACCTGATGTCATTATATGAATTCTCTGCTGCTGTGAAACCTTCTGGTTGTGTCTAGAGGTTGATGCAGTGAATGTGCACTTGGGCAGTCTTACTGTTGATGTTTCTtcaaaatccatgtctcaagcaCTGTCCACTCTTCTGCATCTGAAATCACTCATTATTTAtgaaaattgatttgattttaaaaagTGAGAAAGCATTTTTTAATTTTGATCATCAACGGTCTTACTTGGATTAGCATTTTAATCCACTATAGAAACCCTTTCTGAGTATGAGAAAATGTAATTTATTATTTAATTACCTGAATTGTGTGTCCACTTGGCATGtctaaggctgtgtttacacaggcaatcgaattcatatatatattttttccgcTAAATGGTCTTTTGACCagtcacatcagatcttttctcagagctgatctgattagtcaaaagaccaattagtgaaaaaatagatcagaattaggctgcctgtATAAAAGCAGGCTTAGCGCTTCATATTTTTATGTAATGGCTGTGTTGACACGGGCAACCcaatttttctattttttttttttttttttaccactaatTGGTGTTTTGACCGATCAGCTCTTTGGTCAAAAGATCAGAACTGTTctacctgtgtaaacacagccctACTGTATCCCAATCCCACTGTTACCCATCATTCATGACCTGTTTCATTTCATTTAGTTGTGTTAATGTCCTTGTTTGAAATTTGGGCTTCACTTTTTTGTAGTTCATAGAGGTTGCATCATTACCTCATCTTGATTGCACTGCAGTAGTTTTCAGAGGGATCATGCCTGATGGGAGATCCTGTAGCTGTTCAGTCAATACAGTGTGCTCTTATGAAAGCTGTTTTGGGGTTtaataaataagaatatgttgtTACTTAGCCCTTATATTACTAGCACATTATTTGTTCACCCAATTTTGATATCAGAAGTAATTTCTGGAAGTGTATTGACACATTTGCAATAACTGTTTAAAAGTCCCCAGTAGTTTTATCCCATTTTTAAAGACCACTGCAATATTAGGGTGTTACACATGTTTCTTATTACAACTTTCCAACAGTTGTTAATTTTCATGCAGAGAATATTGAGAATATCTGTGCTGGCTTGGATGATTCTTGGTGTGTGCATTCATTACGCTTGTGATCTTTACAGTATTAAGTTGTGCAAAATGATAATGTATGGCAAGTGTTTGTAAATTATATTCATTCTTGTACATATTTTTGTCCAAGCTAATGAATGTTGGTTCATTATTAACATTTATTTTGAAATAAAatttaatatacattttttttctcactgTCCGGTAAATGATTGGAGAATGAGAATCTAATGGCAAAGTTCTGCATGTTTTTACCGTCACCTTTTACCACAAGGTGGAGCTCTTTGTACATGTCTACAGAGTTCAGCCCCACAGTTGCTTTGACTTATTTGACTTTTTTTCAAGTAGGACAACATTTTAATGAAATATATTCTAAATTGTGCATCAGAAcgtttatttacttatttttccTATTTCTGACACCTTATCTGTGCCTTGAATACTCAAGTAGAATACCTATTACTGTATGTGTATTACAGCTATGGAATTACATGTGTATTACATGAATACAATTGTTCAGACCAAACCGGTGAAATTAAAGTTTGCATTCACTTGTACACTGGTCTTGGCTACAGTGGAGTAAGAATACTATGTCTCAGGTTCATTATAGGTGCAATAAGGCTTAATGTAATGCTAGATTACTATAGCATTATTATAAAGGAGAGGTTTTTACAGGATAAATCCTTAACTCAGGAACTGAAGGGTTAAATGCATAACGTAATCTATAAGGAGTTTGCACATGCTCAGTGTGTTCCCTCTACGCAGAGGTAATGCAAGGGTTTGAGAAGATCTGAGACAGATGAAAACAGCTGTACTTGAAGACCCATAATGCCTTTCGGCTGGCATACTGTTCTGATTTTCAGGCTTTGCAGTACATCCACAATGGCTACGCGAAATCGCTACGCGATCCTTTAATATGCACCCTGCTGAAAAAGCCGAGGAAAAGGGTACCACCGGACCAGTCTCAAAATGACCACCGGCTTCAGCTCGAATTCATGTCGATTCGCAGATTATTTTGTTATCTGCGGACTTGACACTGAAAGCGGGCTTGAACCAGACGAACTGTCAGCTTTATGCCAGTATATAGAGGCTACTAAATTCAGAGATGGGGCCAGAGGATTGGCGAGTGCAGATGAAGgTGAGAATTTTGAGCAGAGTCCACTGCGGAGAACCTTTAAATCCAAAGTTCTAGCACACTACCCAGAGAATGTGGAGTGGAGTCCCTTTGACCAGGATGCCGTTGGCATGCTGTGTATGCCAAAGGGTCTGGCCTTCCGCACGCAGGCGGACACACGTGAGCCTCAGTTCCACTCCTTCATCATCACGCGGGAGGACGGCTCGCGGACGTACGGCTTTGCCCTCACTTTCTACGAGGAGGTGACCAGCAAGCAGATCTGCAGCGCCATGCAGACCCTGTACCACATGCACAATGCCGAACAATACGACATCCTGCACACCCCCACCACCCCGCGGTGCCCTGAGGACCAACGCCACCTCCATCCCCACCCTCTCAACCCCCACCCCCAACACACGCTCCTCCCCACGCCCTCCATCTCCCGGCTGCAGCGCTTCAACTCCTACGACATCAGCCGCGACACGCTCTACGTGTCCAAGTGCATCTGCCTCATCGCGCCCATGGCCTTCCCCCAGGCCTGCAGGAAGGTGCTCCAGCAGCTCCACCAGGCCGTCTCCTCCCCCcagcccccacccctccccttgGAGAGCTACGTCTACAACATCCTGTACGAGGTGCCCCTGCCTCCCGCTGGGCGCTCCCTGAAGTTCTCGGGGGTGTATGGCCCAGTGGTGTGCCAGAGGCCCAGCACGGCAGAGCTGCCTCTCTTTGACTTCCCTATCAGCCAGGTGTTTGAGCTGCTGGGGGTGGAGAACGTCCTCCAGCTGTTTACCTGTGCCCTGTTGGAGATCCAGATCCTGCTCTACTCACAGCATTACCAAAGGCTGATGACTGTGGCCGAGAGCATCACAGCCTTAATGTTCCCTTTCCAGTGGCAGCATGTCTATGTGCCCATCCTGCCCGCCTCACTGCTGCACTTCCTGGATGCCCCAGTGCCCTACCTGATGGGCCTGCACTCCAACGGAGAGGGTGACCGCACCAAACTAGAGCTGCCCCAGGAGGCCAACTTGTGTTTCGTGGACATCGACAACCACTTCATTGAGCTGCCAGAGGACCTCCCTCTGTTCCCCAACAAGCTAGAGTTCATCCAGGAGATCTCCGAGGTGCTGTTGGCCTTCGGTGTGTCTCCGGAGGGGAACCCGCTCCACAGCCAGGGCCAGGCCAAACACTGGGGCTTCCGCTCCACCGACATGGTCACGGACAGACGCAACGGCAACCTGGCCAGCTCGCCCCTCAACTCCTACCTGCTGAGGGAGAACGAGACCATCGCTAGACTGCAGGCCCTGGTCAAGAGGACTGGGGTCAGCCTGGAGAAGttgGATGTGAGGGAGGATGCCAGCAGCAACAAGGACCTGAAGGTGCAGTGTGATGAGGAGGAGCTGAAGATGCACCAGCTCAACATCCAGGTGCGAGAGGTCTTCGCCAACCGCTTCACCCAGATGTTCGCCGACTACGAGGTGTTTGTCATCCAGCCCAGCCAGGACAAGGAGTCCTGGTTCAGCAACAGGGACCAGATGCAGAACTTTGACAAGGCCTCCTTCCTCTCTGACCAGCCTGAGCCCTACCTGCCCTTCCTGTCCCGTTTCCTGGAGACTCAGATGTTCGCCTCCTTCATCGATAGTAagatcctttgccatgatgaTGAGGACAAGGAACACACGTTGAGGGTGTTTGACTCCCGAGTGGACAAAATCCGCATGCTGAACGTGCGCACGCCCACCCTGCGCACCTCCATGTACCAGACCTGCACCAATATCGACGAGGCGGAGAAGGCCATAGAGATGCGGGTGGTTAAGATCGACCACACGGCCCTGCATCCCCACCTGCTGGATATGAAGATTGGCCAGGGTCGCTACGAACACGGCTTCTTCCCCCGGCTGCAGTCTGACGTGCTCTCCACTGGACCCGTCAGCAACAAATGGGCGAAGAGGAGTGCTCCAGCACAGTGGAGGAGGAaggacagacagaaacaacacGCTGAACACCTTTACTTGGACAACgaccagagagagAAATACATCCAGGAGGCCAGGAACCTGGGCACTACCATCCGGCAGCCCAAGCTGTCCAACCTCTCCCCCTCCGTCATCGCTCAGACCAACTGGAAGTTTGTGGAGGGTCTGCTGAAGGAGTGCAGGAATAAGACCAAGCGCATGCTGGTTGAGAAGATGGGCAGGGAGGCGGTGGAGCTGGGTCATGGGGAGGTCAGCATTACAGGTGTGGAGGAGAACACACTTATCGCCTCCCTCTGTGACCTGCTGGAGAGGATCTGGAGCCACGGGCTGCAGGTCAAAcagGGTAAATCTGCCTTGTGGTCCCACCTGCTCCATTATCAGGAGAGCAAAGAGAAGACGGATGCAGCACCAGCCGGTTTGGGTCCCCCAGGTCTCatccacaacacagagagacgcaAGTCTGACGCTGGCGCTGCCTTGCCCCCTCTCAAGGTGTCCCTGATCAGGGACATGAGACACATCCAGAACATTGGGGAGATCAAGACAGACGTGGGCAAGGCCAGGGCCTGGGTGAGGCTCTCCATGGAGAAGAAGCTGCTGTCCAGGCACCTCAAAAAGCTGCTGTCTGACCATGAACTTACAAAGAAACTATACAAGCGTTATGCTTTTCTGCGCTGTGACGATGAGAAAGAGCAGTTCCTGTAccacctcctctccttcaacgctGTGGACTACTTCTGTTTCACCAATGTCTTCACAACCATCATGATCCCATACCATGTGCTGGTGATTCCCAGTAAGAAACTAGGAGGCTCCATGTTCACAGCCAAcccctgggtgtgtgtgtctggggagcTGGCTGAGACTGGGGTTCTCCAGATCCCCAAGCACACTCAGGAGATCACCTTTGAGTGCCAGAACCTGGGCAAGCTGACCACAGTGCAGATGGGCCATGATAACTCAGGTCTTTACGCCAAGTGGCTTGTGGAGTATGTTATGGTCCGGAATGAGATCACAGGTCATGCTTACAAgttCCCGTGTGGCCGGTGGCTGGGGAAGGGGGTGGACGATGGCAGTCTGGAGAGGGTCCTGGTGGGAGAGCTAGTGACACCAAACTCAGAGAACGAGGACAGAATGTGTCGTACGCCCCCCATGCAGCAGTCCCCTGGGATGATGAGGAGGTTCGTCACCATCTCACCAAACAGCAAACCAAAGTTGAACACTGGTCAGATccaagagggagtgggagaggccATCAATGGGATAGTGAAGCACTTCCACAAGCCAGAGAAGGAGAGGGGCAGTCTGACCCTTCTGTTGTGTGGGGAGTATGGTCTAGTCTGGGCTTTAGATCAGGTGTTCCAGCATGGCTTCAAATCCCCACGCCTCTTTAAGAATGTCTTCATCTGGGACTTCTTAGAAAAGTCACAAGTGTACTTTGAGAGTGCTGAGCAGAGGGAGGTGACTCCAGATGAGAACTGGCAAACCAGAGTATGCCACTTCTGCCAATTCATGCGGGCCATCAACAGCACATCTAGGAACATAGGCAAGGATGGGAAGTTCCAGATGCTGGTGTGTCTGGGTGCCAGGGACCATTTGTTACACCACTGGATCGCTCTCCTCGCAGACTGTCCAATCACAGTGCAAATGTACGAAGACACAGCACTGATAAAGGACCGCTCATTGGTAAATTCTCTGATCAGAGTGCTACAGACTTTGCAGGAGTTCAACATTACCCTAGAAGCTTCACTTGTCAAAGGGATCGGTATCTAGGCCCTCCTTCGTTCGCACCAATTGGACCTGACTAAGGAAGACTGTTAGGGACCACTAAAGAACAATTGAACCTTTTTATGTAGAAAGAGACTTGAACAATTAAGGGATGATTTCTGGCTTATATTAAAGCTACTGTTACATTTGCCATATATTAAGTGTAATGAGCCTTTCAAAATGTGTTGTTATTTTTATCCTTAATAATGTTGCTGTTAGACGTTAAGAATATGTTTTCTATTACGATCCATGACTTTCACTTTGTTGAAGAAGATAACCCACCTGTTGTATACTACTTTATTGAAAGCTAAATATTTTCATTGTTATTGTGAACTGCTGACAATGGCTATATTCTAAAAAGGAAATCAAGGAACAAAAACTGTTAATATATTTTCGGAGAAGAACAGTATTATTTTGATATGTATGTCAAGTTGCTTGCTCTGTTCTAATTCTAACTGTCATAATGCAGAGCTTGAAGCAAATGATGTAGAAGTATGCTTTATAAGTATGAATATGACATGGTATAGATGTTTGTGTAGGGTGGGAAACTGATTCACCTACATCAATATGACAGTGTGTAAGTTTGGATCAATCCCCCTGGAAGTACCGTAGGATGCAACTATTTTATATGGATAACTTGGCCTAAGAAGAGGCTCCTGAATAAGATAATGTAGCGTATGCTAATGATGCACAATATGTATTCAGTTGGAGAAGTATCACTATACGGCCATGTCAGTGCTTCACACTTGACACACAACTCTTCAACAGTACAGTATTCATCATAACCATGGCTTGGTAGAAAGTGAGTAATTTATAAAATGACAGCCTTTGTGTAAATACCTCTAACCAGTGCATCCTTCTTTCCAACAACTTCTCATTAATCTTCACCTGTTCTGCCCATTCCTGGCAGGTTTACAACATCATGTCTGTTCAGTAGTGAAAATTGTATGAGCTAATTGCCAGTTAAATTAATAATGTGTGGTACATATGGTTGCTATAAAAGGCCAGATTCAAAATAGAACAAACGATTCTCATCTGAACTGTTGGCGTTTCTGCTATGCAATATAATCCACATCACACAAAAAAATCAACCCAAGATCTAGATGAGAATCATTGGACCTCCTCCATTTTTCTTACTGTGCAGCATAGGATGATGAATAACAATAGCAGTTTGATAGAAGTAGGTGTGAAGGATGTCTTTCCTGTGCCGATGTCTTTCCTGTGCCAATGTCTGGATTGAGTTGGTTGTACTATTCCATGTACAATCGACATGAGCATCTTGGgagatatatttttgtttttcaaTACTGTTGTACATTTGACATAGCCGTATAATGTAGTGTTTACTAAGTGAGGAAATGTGTACagtgtaaaaaattaaataaagaatAAAATTACAGAAATGCAGTAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2314642 lncRNA downstream 3886 34525039 ~ 34526702 (-) True LOC110506692
TU2314708 lncRNA downstream 15266 34515117 ~ 34515322 (-) True G2023790
TU2314707 lncRNA downstream 15623 34514637 ~ 34514965 (-) True G2023789
TU2314705 lncRNA downstream 16651 34513730 ~ 34513937 (-) True G2023787
TU2314703 lncRNA downstream 17330 34513006 ~ 34513258 (-) True G2023785
TU2314641 lncRNA upstream 38129 34621219 ~ 34622187 (-) True G2023723
TU2314644 lncRNA upstream 39297 34622387 ~ 34623840 (-) True G2023726
TU2314896 lncRNA upstream 126646 34709736 ~ 34710366 (-) True G2023961
TU2314898 lncRNA upstream 128328 34711418 ~ 34711650 (-) True G2023963
TU2314902 lncRNA upstream 131123 34714213 ~ 34714587 (-) True G2023967
XM_036964404.1 mRNA downstream 360 34524997 ~ 34530228 (-) False LOC110506692
XM_036964405.1 mRNA downstream 613 34524997 ~ 34529975 (-) False LOC110506692
XM_021586492.2 mRNA downstream 6638 34499589 ~ 34523950 (-) False LOC110506691
XM_021586493.2 mRNA downstream 6638 34499589 ~ 34523950 (-) False LOC110506691
XM_036964099.1 mRNA downstream 6639 34499589 ~ 34523949 (-) False LOC110506691
XM_036964126.1 mRNA upstream 2034 34585124 ~ 34600452 (-) False LOC110506695
XM_021586501.2 mRNA upstream 2034 34585124 ~ 34600541 (-) False LOC110506695
XM_021586503.2 mRNA upstream 2034 34585124 ~ 34600542 (-) True LOC110506695
XR_005039815.1 mRNA upstream 195624 34778714 ~ 34786413 (-) True LOC118944477
XM_036964509.1 mRNA upstream 283841 34866931 ~ 34878551 (-) False LOC110506710
TU2314697 other downstream 28102 34500853 ~ 34502486 (-) True LOC110506691
TU2313928 other downstream 726264 33800216 ~ 33804324 (-) True LOC100136595
TU2312761 other downstream 1651817 32875255 ~ 32878771 (-) True G2022042
TU2312670 other downstream 1696107 32831627 ~ 32834481 (-) True G2021975
TU2312677 other downstream 1711608 32810623 ~ 32818980 (-) True G2021979
TU2315702 other upstream 293332 34876422 ~ 34928381 (-) True G2024673
TU2316001 other upstream 812984 35396074 ~ 35399967 (-) True G2024949
TU2316121 other upstream 912697 35495787 ~ 35497803 (-) True G2025061
TU2316067 other upstream 965170 35548260 ~ 35548757 (-) True LOC110506721
TU2316868 other upstream 1760066 36343156 ~ 36343434 (-) True G2025757

Expression Profile