RNA id: TU2314641



Basic Information


Item Value
RNA id TU2314641
length 734
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G2023723
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 34621219 ~ 34622187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTGTGTGCCTGAAAGGTGGTCTCCTTACTCTGTAGTATGGCCTTGAAGATCTGGTATTCATCCACCAGGTTGTCTTCGTCATCTACAGCTGTAGTGTATCCCTCCAGTGCAGTCTCCTCTGCGTCGTCCTCATCCCAGTCCTCATCATCCCCATCCTCTCCTGCATGCTTGGCCAGCATCTCCAAGTACTCCTGGCCCTCCTCATCAATGTCATCCTCATCACTGCCCAGCTCGACTGAGGAAAGGCGTAGGCCCTCTTGAGGCCGTTGAAGAGCAGGATGGCTGCGGGAAGCAGTTGGCCAGCCACCTGGTTGACAGCCTGGGGCCTCTGCTCCAAGTCAATGAGGGCACACAGGCCAAGCACACAGATCTTCCTATCGTGGAGCCTGgggaataataaaaaaaaaaaaatgtaatcttacAGTACATTTTTCCTCTCTACTTGATATCAAACTATATGGTGGACCAGAGAAACCAGACGAGCTGTAAATATATTAAACGTGAGCATCTTTCCTGGTCTTACCCCAGGAAGCAGTCAACGTCTTTGAGCCACTGGGAGATGAAGTGGTTGGTGATGGGCTCAGTGTTGTTTGGGAAGCGCAGGTTCTCCAGGGTGTTGAGCAGCAGAGGGGGGCTGTAGTACAGGGCAGCGATGGCCACTTGCAGACACATGGTCCTCAGCTCACTGGTCTTCACCTCCCTCGTCAGCCTCTCCAGCGCAGCAGCCACAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2314642 lncRNA downstream 94517 34525039 ~ 34526702 (-) True LOC110506692
TU2314708 lncRNA downstream 105897 34515117 ~ 34515322 (-) True G2023790
TU2314707 lncRNA downstream 106254 34514637 ~ 34514965 (-) True G2023789
TU2314705 lncRNA downstream 107282 34513730 ~ 34513937 (-) True G2023787
TU2314703 lncRNA downstream 107961 34513006 ~ 34513258 (-) True G2023785
TU2314644 lncRNA upstream 200 34622387 ~ 34623840 (-) True G2023726
TU2314896 lncRNA upstream 87549 34709736 ~ 34710366 (-) True G2023961
TU2314898 lncRNA upstream 89231 34711418 ~ 34711650 (-) True G2023963
TU2314902 lncRNA upstream 92026 34714213 ~ 34714587 (-) True G2023967
TU2314906 lncRNA upstream 96595 34718782 ~ 34719014 (-) True G2023971
XM_021586503.2 mRNA downstream 20677 34585124 ~ 34600542 (-) True LOC110506695
XM_021586501.2 mRNA downstream 20678 34585124 ~ 34600541 (-) False LOC110506695
XM_036964126.1 mRNA downstream 20767 34585124 ~ 34600452 (-) False LOC110506695
XM_036964403.1 mRNA downstream 38125 34541053 ~ 34583094 (-) True LOC110506693
XM_021586497.2 mRNA downstream 38129 34530588 ~ 34583090 (-) False LOC110506693
XR_005039815.1 mRNA upstream 156527 34778714 ~ 34786413 (-) True LOC118944477
XM_036964509.1 mRNA upstream 244744 34866931 ~ 34878551 (-) False LOC110506710
XM_036964512.1 mRNA upstream 244744 34866931 ~ 34878552 (-) False LOC110506710
XM_036964511.1 mRNA upstream 244744 34866931 ~ 34878668 (-) False LOC110506710
XM_036964510.1 mRNA upstream 244744 34866931 ~ 34879117 (-) True LOC110506710
TU2314697 other downstream 118733 34500853 ~ 34502486 (-) True LOC110506691
TU2313928 other downstream 816895 33800216 ~ 33804324 (-) True LOC100136595
TU2312761 other downstream 1742448 32875255 ~ 32878771 (-) True G2022042
TU2312670 other downstream 1786738 32831627 ~ 32834481 (-) True G2021975
TU2312677 other downstream 1802239 32810623 ~ 32818980 (-) True G2021979
TU2315702 other upstream 254235 34876422 ~ 34928381 (-) True G2024673
TU2316001 other upstream 773887 35396074 ~ 35399967 (-) True G2024949
TU2316121 other upstream 873600 35495787 ~ 35497803 (-) True G2025061
TU2316067 other upstream 926073 35548260 ~ 35548757 (-) True LOC110506721
TU2316868 other upstream 1720969 36343156 ~ 36343434 (-) True G2025757

Expression Profile