RNA id: TU2314113


Basic Information

Item Value
RNA id TU2314113
length 2275
lncRNA type sense_over
GC content 0.46
exon number 6
gene id LOC110506684
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 34109965 ~ 34118269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAATCAGGAAGGATGCTGGAGGGttgggtttccactagttaccacagccacagagTCAAAATGGACTATATcgttaaaaaaaaacgtattttgggGCTAAATTTAAGGTGAGGCAtaaagttagcagtgtggttggggttaggtttaaaatcagattgtaCGAATAACAATTGTAAAAATGGGCGGGGTGtagccataattatgactttgtggttgtggtaactagtgacgaccagaGGTTTAATGTACAGCCAAATATACTCCATTCTCTACTATCTCTGGTACAGTTTATCTGTGACAAAATGTCGATGACAACTATGTAGAAGGTTACTCTGATTTTCTGCTCTGTCCTCTGTGTTTTGTTTTTTCTTCCCTAAATAATTTTCCAGAGAGGGAAGAATGATGTAGGGCAGCCCGAGGTTGGTCCTGGGTATTATCCTCCCATGATGCATCGCCTACAGATGCCAGAGGAGTGCCTCGGACAGTGGATGGAGGGGACTCATGACTCTGGGCCCCACAGCCCTGAGGTCCTGGCTAAAGTCAAAGGCATGGGCACACTTCAGATCCGAGGAGCCACTAAATCCAATCTGATCAGCCAGGACATTCCCATCTACGGATTTGGAATCCTACTCCACATCTTCTTCATCATATTCTAGATAAGCTGCACAATGTCCACCCTAGACTGGCTCAGTTAAATGGATAGACAAACTATTTAGAGGCAGGAATGTAGATGATGTAGACTATTACAGTTTTTAACAGCATCCATGTAATACCTATACTAGCTAGGAGTCCAGTGCATCCAGTACATTAGAAGGTGTGCACACCATAAATGCATTGTTGTATTCACAGATGACAACTAGGCCTAAAGGAAAAAGTACTAAACTGGTATGCCGATTTCCTACAATGACATTTGAAGCttggcaggagaggaggaATGATGAGCTGGCCCAGCTTCAGGAGAAGCTGCTGGAGACAGAGGGTGAAGTAGAGGATCTTCTCCAGAAGGAGCAGCACTCCTAACAGCACGACTAGCAGCAAGGTTAGAAGAGCATCCAAGCAGGAGAAGTTACTGCGGAAGCTGAGTAAGATCAGTCGGGTGATGCAGGAGGTACGACTGATGGAGGGGGCCACACCTGAGATGGTGCCCTACGCTGCTGACTGAGAGggctacCATGAGGAGACCTACCcccagtatAAGGAGCCCGGAGGCAGGCGCAGCGGCAGTTCTCATCACCATCCTGGAGGAGCCTGCTGCTGACTCAGATACCCACTGCCGAGGCCCTGGCTGAGGAGGTAGAAGAGGacgcagaggaggaggaggagcagtagCTCTGCCCGCCCCCACCTCCTGAAGGAGGAATGGAAGAAACGGGTAGTAGTCCCACCAGAGTAAAAAAGCTAATCAGATTCAGCGACCACAAAGATGTGTTTCACTACCCTAAGCAGGATACAGTCTATGAATATAGGtatgaagaggagaaggaagagaggaggaagaggagcaagtggatgagacagaggaagaggaggaagaggagcaagtggatgagacagaggaagagggagtagTAGGTGATGAAGACCCACTGATGGAGGCCGAGTCTCTCAGTTTTAGTTGTGATGTCTGTAGTAATCCAGAAGCAGAAGAAGAGATGGAAGAAGAGTACATTCTACTGTCTCAGTCTGAAGAGACAGACATCTTCACCCCACCAGATAGGTCTGGGGAGCTGGGGATTGGGAGTTCTCTCAGGttgaggaacaggagagagagacagagggcagagTCAATGAGGAAACTAGTTCATCCTAAACTTGCCTCTCTAGCCCTTTGACCTTACTGAATGTTCTGAATATTCCCAAGAATGTACCTCTCCTTATGAAAATCCCCGTTTTCTATCCTGTCTCCTTGCGTCCCAAGACAGAATATGCTGTTCAGTGGGTGAATTTTGTGATCCTAACTAAACTACCTAATACCCTAATATTCATTCTGCTTTAAAGAAAACCATTTACCCACAATTCATCATGTCCTTTGATGGTAGACATCAAACTATCTGACTAACTTTATTCCAATATGGCAGTCAAGCATCGTAGAGACCCTGGTGTCCTCTGGGATAGAttgtaaacagagagagagcagggacccACATAAATGAGTAAACAGAGGTAGATCGTTCAAGTCCAGCTTTTGTATCTCAGACTATTAAAGTGGACACATTATATTAAAAGGTCAtatgaaaaatattttttcaaaCCAGCAACTATTAAGCCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2314084 lncRNA downstream 45455 34051298 ~ 34064510 (-) False G2023221
TU2314085 lncRNA downstream 45455 34051298 ~ 34064510 (-) True G2023221
TU2314018 lncRNA downstream 119313 33977638 ~ 33990652 (-) True G2023172
TU2313923 lncRNA downstream 168545 33940525 ~ 33941420 (-) True G2023085
TU2313924 lncRNA downstream 170253 33937830 ~ 33939712 (-) True G2023086
TU2314143 lncRNA upstream 10039 34128308 ~ 34128582 (-) True G2023273
TU2314150 lncRNA upstream 16670 34134939 ~ 34135292 (-) True G2023280
TU2314352 lncRNA upstream 126615 34244884 ~ 34247712 (-) True G2023453
TU2314413 lncRNA upstream 220279 34338548 ~ 34338803 (-) True G2023513
TU2314434 lncRNA upstream 240450 34358719 ~ 34358947 (-) True G2023532
XM_036963255.1 mRNA downstream 181976 33846010 ~ 33927989 (-) True LOC110506676
XM_036963254.1 mRNA downstream 181977 33846010 ~ 33927988 (-) False LOC110506676
NM_001124587.1 mRNA downstream 294322 33801334 ~ 33815643 (-) False LOC100136595
XM_036963622.1 mRNA downstream 721020 33386852 ~ 33388945 (-) True LOC118944422
XM_021586464.2 mRNA downstream 941737 33159342 ~ 33168228 (-) True nucb2a
XM_021586477.2 mRNA upstream 34407 34152676 ~ 34184090 (-) False LOC110506685
XM_036964015.1 mRNA upstream 34407 34152676 ~ 34184095 (-) True LOC110506685
XM_036963623.1 mRNA upstream 235504 34353773 ~ 34358034 (-) True LOC110506117
XM_021586478.2 mRNA upstream 257917 34376186 ~ 34390655 (-) True LOC110506686
XM_036963335.1 mRNA upstream 271380 34389649 ~ 34412220 (-) False LOC110506687
TU2313928 other downstream 305641 33800216 ~ 33804324 (-) True LOC100136595
TU2312761 other downstream 1231194 32875255 ~ 32878771 (-) True G2022042
TU2312670 other downstream 1275484 32831627 ~ 32834481 (-) True G2021975
TU2312677 other downstream 1290985 32810623 ~ 32818980 (-) True G2021979
TU2312650 other downstream 1393052 32716126 ~ 32716913 (-) True G2021956
TU2314697 other upstream 382584 34500853 ~ 34502486 (-) True LOC110506691
TU2315702 other upstream 758153 34876422 ~ 34928381 (-) True G2024673
TU2316001 other upstream 1277805 35396074 ~ 35399967 (-) True G2024949
TU2316121 other upstream 1377518 35495787 ~ 35497803 (-) True G2025061
TU2316067 other upstream 1429991 35548260 ~ 35548757 (-) True LOC110506721

Expression Profile