RNA id: XM_022669583.1


Basic Information

Item Value
RNA id XM_022669583.1
length 1985
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC103034850
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10226396 ~ 10254739 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACATCTCTGTTTGTGCTGCGGGCGGCGGAGTGGAGATCAATGAAAGCGGGCGGTTTTACCGAAACTGGTCGGACAAGCCGAATAGGAGGAATAAACCGCGGACACGGGCAGTTTATACGAAACAGCGCGCGTAGAAAAAGCTTCTGATATATACGGATATTTAATAACCGAGTGTAATACTGAATGCTGGCGTTTGGAGAGTGAAATGTGGAAAATCTACAGTTGTACTGTAGCCTAACGCAGCccggaggaagaggaggaggaggagagactgGTTGTTTCAGCgctgagaaaagagagaaagaaagaaagagaggacaCGGGAATTAACCATGATCTTCGCCAACACCGCCAACCCCGCGAGGCCGCCCTACAGAAAACAGCCTCCAGTTGCTCCGGCCAGTCTCCCGATGGCTCCGCCCAGCCCTAGCACCAATAGCAGCACgaataacagcagcagcaacagcagtaCGACCGGATGGGAGCAGCTCAGCAAAACCAACCTGTACATCCGGGGCCTGCCCCCCTCCACCACCGACCACGACCTCGTCAAGCTCTGCCAGCCgtaCGGAAAGATCGTCTCCACAAAAGCCATTCTGGACAAGACCACCAACAAATGCAAAGGTTATGGCTTTGTGGATTTCGACAGTCCGGTGTCTGCGCAGAAAGCTGTGGCAGCGCTGAAGAACAATGGAGTTCAGGCTCAGATGGCCAAGCAACAGGAGCAGGACCCCACCAATCTGTACCTGTCTAACCTGCCGGTGTCTATGGATGAGCAGGAGCTGGAGAACCTCCTGAAGCCCTTCGGGCAGGTCATCTCCACCCGCATCCTCAGAGATGCACATGGTGTCAGTCGGGGCGTGGGATTTGCCAGGATGGAGTCTACAGAGAAGTGCGATGCTGTGATCTCACACTTTAACGGAAAGTTCATTAAGTCCGCGTCAGGAATGCTAGgtgcCTCAGAACCGCTGCTCTGTAAGTTTGCTGATGGCGGGCAGAAGAAGCGACTGAGTCAGAGTAAATACATCCCCAACGGTCGAACCTGGACACGGGACGCCGAGAGTGGCATCACGCTGACATATGACCCGAACGCGACTGCCCTTCAGAACGGgtaCTACGCCTCTCCCTACAGCATGGGCAACAGAATAATGCCCCAGACTGCTGTGACCCCTTACATCTCACCCGTCTCCACCTACCCGgTTCAGAATCCCTCCTGGATGACACATCAGCCTTACATTATGCAGCACCCgGGAGCTGTACTGTCGCCCCCTATGGAGCACCCCATGCCACTACAGCCGTCCTCCATGTTGGCTCCTCTGACCCAGCAGATGGGCCatctctctctgggtggcaCTGCTACGTTTATTCCTGCAAACACAGCTATGCAAGGAGCATATATTCCTCAGTATGCCCATATCCAGCCCACCACCATCGCCACAGAGgATCCCAGTGTGCAGGCCCAGGATGTGACCTCCAATGATCCCTCCCCTTACCCGTTCCAAACTAGCAAGCAATAAGAGGggtgCCGGAGCATTGGGAGGCAGATTCAGAGGAAGGCTGCAATGAACACAGGCTTAGCTTCTTTggacaggaagtgacatcacagaGGAAACAACACTTTTGCACaggttacaaaaaaacaaaaaaagaagttcATGGTGTAATTAACCCACCACCAACAAACCACCTCAGAGGAGCTTGACAGACAACAGGACTTCAACCACCAAAACAATGCAATTCACCCGGGATGACTGGCGAGGGGGCGGAGCAGAGTTTTATTTTGCTAACGAGAGGAAAAGAGacgaagacaaaaaaaaaaacaaacaaaaaaaacgctAATTTTTTACCGAGAACTCGCGACACAGAACACAAGCGGCGTGTGCTCGTACCTTTAGATGCATGAGAGGACTTTTTAGTATggtttttagtgtgtttttactgaccgtttctctctttctctctcacacacacacacacacacaca

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55860 lncRNA downstream 193731 10031745 ~ 10032665 (-) True G41540
TU55823 lncRNA downstream 273105 9946205 ~ 9953291 (-) False G41514
TU55825 lncRNA downstream 273105 9950410 ~ 9953291 (-) True G41514
TU55710 lncRNA downstream 316120 9910046 ~ 9910276 (-) True G41424
TU55695 lncRNA downstream 346007 9880148 ~ 9880389 (-) True G41409
TU55880 lncRNA upstream 15756 10270493 ~ 10270820 (-) False G41551
TU55884 lncRNA upstream 26689 10281426 ~ 10289658 (-) True G41553
TU55885 lncRNA upstream 31984 10286721 ~ 10289658 (-) False G41553
TU56011 lncRNA upstream 267589 10522326 ~ 10522569 (-) True G41649
TU56012 lncRNA upstream 327713 10582450 ~ 10624619 (-) True G41650
XM_007237337.3 mRNA downstream 10952 10178551 ~ 10215444 (-) True LOC103035377
XM_007237339.3 mRNA downstream 51680 10129964 ~ 10174716 (-) True LOC103036004
XM_007237338.3 mRNA downstream 99873 10078854 ~ 10126523 (-) True ly75
XM_022669581.1 mRNA downstream 156593 10035329 ~ 10069803 (-) True LOC103036321
XM_007237344.3 mRNA downstream 196771 10023049 ~ 10029625 (-) True LOC103037233
XM_007252595.2 mRNA upstream 119125 10373862 ~ 10386261 (-) True LOC103031839
XM_007252596.3 mRNA upstream 142295 10397032 ~ 10403351 (-) True LOC103032157
XM_015606708.2 mRNA upstream 174693 10429430 ~ 10482056 (-) False fes
XM_007252597.3 mRNA upstream 174914 10429651 ~ 10485606 (-) True fes
XM_015606709.2 mRNA upstream 174914 10429651 ~ 10482056 (-) False fes
TU55869 other downstream 570 10163460 ~ 10225826 (-) False G41543
TU55870 other downstream 570 10163460 ~ 10225826 (-) True G41543
TU55838 other downstream 262434 9962615 ~ 9963962 (-) True G41522
TU55824 other downstream 273045 9949866 ~ 9953351 (-) False G41514
XR_002649929.1 other downstream 1103968 9112078 ~ 9122428 (-) False LOC103022371
TU55881 other upstream 15599 10270336 ~ 10270820 (-) True G41551
TU56162 other upstream 871648 11126385 ~ 11145161 (-) True G41763
TU56166 other upstream 895932 11150669 ~ 11157835 (-) False G41767
TU56287 other upstream 1197043 11451780 ~ 11469562 (-) False LOC103040665
TU56297 other upstream 1363784 11618521 ~ 11678995 (-) False LOC103041480

Expression Profile