RNA id: XM_007257920.3


Basic Information

Item Value
RNA id XM_007257920.3
length 1565
RNA type mRNA
GC content 0.52
exon number 4
gene id bmf
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3175798 ~ 3206686 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttatatagctaGTTGTTAAGCCATTCAAGTAGTAACCCGTTTACATGAGGATAGATTTagcctttttaattttaagctaACAGCTCATTCACACTGCGCATTTATATTATTCGGTTTAAATGTAATAGGTCGTTAATTAAACTCACAGAAATGAGAATACCTGCCTGCAGAAGGACAGAAGCAGTAAGAGCAGCGCTgtaacacactgtaaactgcacgCTGTCAGGTTTGACAGCTCGCCGCGCGTGTAGTTCAACCGGGCTGCTGTTCTTCCCGCCGCTCCGGGAATTTCCCTTCCACGTGTCTGATAAAAAGGGGGCGGGATCATAACAAAGACACGTGACGGGTCTTAAGACGAGCGTGTGGTCGGCGCTGGTGTTACGTATCCCGGGGGGCGGGGCCTGCTGCTGTCGTAGTTGGAAATGAGGCTCAGCGGCTGGAGGCGAAGATCAGAATGAAGACAGAGGTGGAGAGTAGAGGAGCTGAACGGTGCGGAGCGAAGGGAACAGAGGAAAAAAcggagagaacagagagaacagaggagAAAACGGAGAGAGAAGTGCTATAGCAAGAAGTACTGGACTTAAAGGACTTTAAACTAGGACAACCAGAGgtGGGGAGCGTGGAAGGCCCTGCTCATGGACGATGAGGAGGATGATGTGTTCGTTACGGATCCAGAGCCTTGGCGTTCCCCGATCAGTGTGATAAAGCAGGAGGAGCGTGGCACACAGACTCCAGGGCGGCCGCCGGCTCGGACCAATGGCATGCTGCCCTGCGGAATATCCGAGGAGCCAAGACGCCTCTTCTACGGTAGTGCAGGACTGTTATTACTGGCACCGTCTGCCCGTTCTGAACGCGTCGGGGACGCCATGTTTCGGGAGGAGCATCGAGCCGTTGAGCCTCGGCGGCGGCCGGCGCACAGCGTGGAGGCCCGTATCGGACAGAAGCTCCAGATGATCGGAGACCAGTTTTATCAAGAGCACATGCTGCAACACAGAAACCAAAGGAACCAGCAGCCGCTTTGGTTGCGCTTGGCGTCGGCGCTCTACACGCTCCTGTTCGAGAGGGAGCCGGCGGCTCACGGGAGGCGAGAGGACCGGAGGTGAGATGGCCACCTGgaaaaaactttacaaaaactGCCACCTTTCGTCCCGGCTTCATCCCGAAGCAGGGCGCCTAATGGCACTGTCTGATTTTTGACACGGGTTTTCCGGGAGAggagggaaaaataaaaaaaaacgagacGGAAGGCGAACGTCTCCGCGGGACGGAGGCGCCGGTTTTTACAggatctttcttttcttttttcttcctcccCCCTCAAGAAGATGCCATGGTGTTCACCAGACTCTTTGACAGGAATATTTTCATAAGGAACTTTGTTGAGGTATTTTGTACAGTATGTGCTGTCGTCTCTGTTTCGTTTCATTTCGTTTCGTTTCGTTTGCACTTCCACTCATGTAAGTTTTGAACAACCTCCACGCGTCCTGGGAATGCCTTATCGTCTCCAGCCACTGCAGAAAGaacgtctaaaaaaaaaaaaaaaaaaaaagtgtggactaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104901 lncRNA downstream 69213 3106385 ~ 3106585 (-) True G77779
TU104899 lncRNA downstream 84170 3000586 ~ 3091628 (-) True G77777
TU104884 lncRNA downstream 194178 2964024 ~ 2981620 (-) False LOC103029757
TU104867 lncRNA downstream 311149 2863844 ~ 2864649 (-) True G77755
TU104864 lncRNA downstream 408500 2767046 ~ 2767298 (-) True G77752
TU104925 lncRNA upstream 6248 3212929 ~ 3213153 (-) True G77801
TU105035 lncRNA upstream 64075 3270756 ~ 3284677 (-) True G77888
TU105038 lncRNA upstream 89667 3296348 ~ 3297328 (-) True G77891
TU105044 lncRNA upstream 103739 3310420 ~ 3318565 (-) True G77894
TU105046 lncRNA upstream 103739 3310420 ~ 3310923 (-) False G77894
XM_022672599.1 mRNA downstream 131035 2966898 ~ 3044763 (-) False LOC103029757
XM_022672598.1 mRNA downstream 131035 2966898 ~ 3044763 (-) False LOC103029757
XM_022672597.1 mRNA downstream 131035 2966898 ~ 3044763 (-) True LOC103029757
XM_015608038.2 mRNA downstream 271150 2900144 ~ 2904648 (-) True LOC103025229
XM_015608044.2 mRNA downstream 280117 2883004 ~ 2895681 (-) False LOC103024903
XM_007257936.3 mRNA upstream 95478 3302159 ~ 3303567 (-) True ankrd9
XM_022672608.1 mRNA upstream 438416 3645097 ~ 3714357 (-) True prkd1
XM_022672609.1 mRNA upstream 438416 3645097 ~ 3714016 (-) False prkd1
XM_022672614.1 mRNA upstream 674638 3881319 ~ 3909337 (-) False strn3
XM_022672612.1 mRNA upstream 674638 3881319 ~ 3909335 (-) True strn3
TU104742 other downstream 985145 2190313 ~ 2190653 (-) True G77656
TU104721 other downstream 1020458 2150788 ~ 2155340 (-) True gchfr
TU104716 other downstream 1020458 2151155 ~ 2155340 (-) False gchfr
TU104718 other downstream 1020458 2151438 ~ 2155340 (-) False gchfr
TU104704 other downstream 1128557 2042998 ~ 2047241 (-) True LOC111193168
TU105040 other upstream 90901 3297582 ~ 3348989 (-) True G77892
XR_002650301.1 other upstream 426413 3633094 ~ 3638915 (-) True LOC111193170
TU105108 other upstream 484926 3691607 ~ 3714277 (-) False prkd1
TU105210 other upstream 627881 3834562 ~ 3840570 (-) True G78023
TU105293 other upstream 838753 4045434 ~ 4206384 (-) True G78083

Expression Profile