RNA id: XR_002650319.1


Basic Information

Item Value
RNA id XR_002650319.1
length 765
lncRNA type read_through
GC content 0.45
exon number 4
gene id LOC111193191
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11792985 ~ 11796524 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGATGCTGTGCTGGttggattagtaggttctggggttttatAACAGATGACGCTGTGCTGGttggattagtaggttctggggttttataacagatggatggtgctgtgctggttggaTTAGTAGGTTCTAGGGTTTGATAAccgatggtgctgtgctggttggattagtaggttctggggttctATAACAGATGACGCTGTGCTGGttggattagtaggttctggggttctATAACAGATGACGCTGTGCTGGttggattagtaggttctgggggttTATAACAGAtgacgctgtgctggttagattagtaggttctgggggttTATAACAGATGACGCTGTGCTGGttggattagtaggttctggggttctataacagatggatggtgctgtgctggttggattagtaggttctggggttttatAACAGATGACGCTGTGCTGGttggattagtaggttctgggggttTTATAACAGATGACGCTGTGCTGGttggattagtaggttctgggggttTTATAACAGATGACGCTGTGCTGGttggattagtaggttctggggttttatAACAGATGACGCTGTGCTGGTTGGATTAGTAGTTTCTGGGTTTTTATAACAGAtgacgctgtgctggttagatgaGTAGTTTCTGGGTTTTTATAACAGATGACGCTGTGCTGGTTGGATGAGTAGTTTCTGGGGTTttataacagatggatggtgctgtgctggttggattagtaggttctgggttTTTATAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107510 lncRNA downstream 4455 11787424 ~ 11789590 (-) True G79806
TU107508 lncRNA downstream 7319 11786047 ~ 11786726 (-) True G79804
XR_002650325.1 lncRNA downstream 8154 11781095 ~ 11785891 (-) True LOC111193195
TU107520 lncRNA upstream 6541 11803065 ~ 11805194 (-) True G79809
TU107559 lncRNA upstream 115404 11911928 ~ 11916389 (-) True G79844
TU107561 lncRNA upstream 115404 11911928 ~ 11916389 (-) False G79844
TU107570 lncRNA upstream 128868 11925392 ~ 11926733 (-) True G79849
TU107569 lncRNA upstream 129696 11926220 ~ 11926733 (-) False G79849
XM_022672694.1 mRNA downstream 430837 11220363 ~ 11363208 (-) True ttc27
XM_022672474.1 mRNA downstream 585361 11205127 ~ 11208684 (-) True LOC111193129
XM_022672693.1 mRNA downstream 610104 10941687 ~ 11183941 (-) True ltbp1
XM_007238737.3 mRNA downstream 857782 10822882 ~ 10936263 (-) False rasgrp3
XM_022672714.1 mRNA upstream 329303 12125827 ~ 12150716 (-) True rlf
XM_015603270.2 mRNA upstream 545415 12341939 ~ 12372767 (-) False ncmap
XM_007244575.3 mRNA upstream 722939 12519463 ~ 12524837 (-) True yipf4
XM_007244579.3 mRNA upstream 788638 12585162 ~ 12613731 (-) True edaradd
XM_007244688.2 mRNA upstream 934102 12730626 ~ 12735104 (-) True LOC103024740
TU107214 other downstream 610116 11097167 ~ 11183929 (-) False ltbp1
TU107221 other downstream 610206 11097167 ~ 11183839 (-) False ltbp1
TU107228 other downstream 610206 11097167 ~ 11183839 (-) False ltbp1
TU107210 other downstream 864449 10928640 ~ 10929596 (-) True G79582
XR_002650315.1 other downstream 1722161 10034686 ~ 10071884 (-) False LOC103027354
TU107591 other upstream 173440 11969964 ~ 11971939 (-) True G79865
TU107689 other upstream 361062 12157586 ~ 12192028 (-) True G79945
TU107863 other upstream 788718 12585242 ~ 12613485 (-) False edaradd
TU107975 other upstream 1079515 12876039 ~ 12912380 (-) False LOC103046962
XR_002650329.1 other upstream 1379812 13176336 ~ 13176676 (-) False LOC111193198

Expression Profile