RNA id: TU107559


Basic Information

Item Value
RNA id TU107559
length 647
lncRNA type intronic
GC content 0.45
exon number 2
gene id G79844
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11911928 ~ 11916389 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAGAGATTCTGTCAACaacaaattgtacttttattaagttttcttAGGTTCTAAACTGTCTCACTCCTTAACCCCCCTTTTTCCCTATACACTCCTAACCTTTTGCCCCTCACCCTTATCTCTCACATCTCTCCTTTGTTTAACATAAGTTGATAGAGACACCCCCAATGATGACACCCCCCACATACTCCTCCATAAACCCTTACCCTTTCTCCCCCTGCTGTGTTCAAAGCAGTTTCTCCTGTATGTAAAGTCCTGCTAAAATGTCTTAGTAGCTCAGTCTAGTTGAGTCTTGGTCAGAGAGTCTCACACAGACAGTAACAGACAGACAAGTCACATGGACTAGTCAGGCGGACACAGAGGGAGCAACGACCAACTAAGCTGTGCCCgtgtagattttctgtctgcacgagaataaactcaagtcatctctcaagctgtctcctgattcctgattctgactcctgattcctgaaagccgaATTTCTAACAATAGTCAGGCGGACACAGAGGGAGCAACGACCAACTAAGCTGTGCCCgtgtagattttctgtctgcacgagaataaactcaagtcatctctcaagctgtctcctgattcctgattctgactcctgattcctgaaagccgaATTTCTAACACAT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006935 chemotaxis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0097485 neuron projection guidance biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko04390 Hippo signaling pathway
ko05217 Basal cell carcinoma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107520 lncRNA downstream 106734 11803065 ~ 11805194 (-) True G79809
XR_002650319.1 lncRNA downstream 115404 11794045 ~ 11796524 (-) False LOC111193191
TU107512 lncRNA downstream 115406 11793291 ~ 11796522 (-) False LOC111193191
TU107570 lncRNA upstream 9003 11925392 ~ 11926733 (-) True G79849
TU107569 lncRNA upstream 9831 11926220 ~ 11926733 (-) False G79849
TU107586 lncRNA upstream 38954 11955343 ~ 12040430 (-) False G79861
TU107590 lncRNA upstream 53052 11969441 ~ 11971939 (-) False G79865
TU107592 lncRNA upstream 53052 11969441 ~ 11971939 (-) False G79865
XM_022672715.1 mRNA downstream 103346 11642590 ~ 11808582 (-) True pdzd8
XM_022672694.1 mRNA downstream 548720 11220363 ~ 11363208 (-) True ttc27
XM_022672474.1 mRNA downstream 703244 11205127 ~ 11208684 (-) True LOC111193129
XM_022672693.1 mRNA downstream 727987 10941687 ~ 11183941 (-) True ltbp1
XM_007238737.3 mRNA downstream 975665 10822882 ~ 10936263 (-) False rasgrp3
XM_022672714.1 mRNA upstream 209438 12125827 ~ 12150716 (-) True rlf
XM_015603270.2 mRNA upstream 425550 12341939 ~ 12372767 (-) False ncmap
XM_007244575.3 mRNA upstream 603074 12519463 ~ 12524837 (-) True yipf4
XM_007244579.3 mRNA upstream 668773 12585162 ~ 12613731 (-) True edaradd
XM_007244688.2 mRNA upstream 814237 12730626 ~ 12735104 (-) True LOC103024740
TU107214 other downstream 727999 11097167 ~ 11183929 (-) False ltbp1
TU107221 other downstream 728089 11097167 ~ 11183839 (-) False ltbp1
TU107228 other downstream 728089 11097167 ~ 11183839 (-) False ltbp1
TU107210 other downstream 982332 10928640 ~ 10929596 (-) True G79582
XR_002650315.1 other downstream 1840044 10034686 ~ 10071884 (-) False LOC103027354
TU107591 other upstream 53575 11969964 ~ 11971939 (-) True G79865
TU107689 other upstream 241197 12157586 ~ 12192028 (-) True G79945
TU107863 other upstream 668853 12585242 ~ 12613485 (-) False edaradd
TU107975 other upstream 959650 12876039 ~ 12912380 (-) False LOC103046962
XR_002650329.1 other upstream 1259947 13176336 ~ 13176676 (-) False LOC111193198

Expression Profile