G79861


Basic Information

Item Value
gene id G79861
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11955343 ~ 12040430 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107582
cTATACATGCTCTCATGTTAACTCGCTCAGATACAGTTATAAAGACGCAGCCTACAATAAACCCATAAATATTTTGaccactttttttaaacttcgACTTAATGAAAGCTCACAAAAGGAGCCACTGTCCTCATTgaggaaaccaaaaaaaaactgatgtcGGTTAAgcgacaacacacacacacacacacacacaataacacaaagaAGAAACATCCACGTGTTCCCCAGGTAATAAAGATGCTATTTGATAGTGACTATTTGTCCATAATAAAGCCACTGCGTTGCACAAAGCATTGCTTTCGAGCCTGGCACAACTGGGATGTTGACGAGACCAAACCGAACAGAATCTATCAGAACttcactcatccatccatctatccatccatcaaaGCTTTATTTACTCCTTCCTGAATCCCCTTCCTTTCTAGTAGGAGAAACATTCTTCTGCAGCCTGCAGAGAGCAGAACTTGCACATCTTGTTCCTTTTCACACATTACACTCGTACACCCCGTTTACACATACAAAGTGATAAGGAATCTTGGCCTATGTCTAAGCAGGAAATCCAAACTGATTTTAGACCTGATTTGTATTAAtcttttaaccccttaaaccacattaaaagtaaaagcatCTGAAGAGCCGTTTAGATTAACTGActtgactactactactactactactactactactactactactactactactactgaccTGTTCTGTtggcagcagttttttttacacagactAGAGAAGCTTGTAGAGAAGCAtgtattatttttctaatatttgCATAATTTTGTCTCAAATAAATTGTGCATTTAGTGTAAACTCAACAGGACATTTGTTGAGTATATTTTAAACTCTCACAAGAGACTGTCAAAGTTAAATGAGGAATAAGGAGCTACTAATACTATGAAATAATGGCAGACAATGACAGAATTGACGCATGCTTAAACAGCAATGATTCATCATTTCCTGTTAATATAAAACCGTTCAGTGCTTTAATATTGTGTACAACAGCCTGACAAACTCACACCGTTAAGATTCGTATATAATTTATATCTATTACCATAAGTGTGTGGAATGCAGCCCTGTAGTACTCAATGACAAAGAAACTGTAGCAGACTACTTATGGAGGCAAAGATTCCTTATCACAGAGTTAATGCGTGCCTTACTGCAAGAGGAAAAAACTGCACTCaatttaatatacaatatacaaaacaaatacatgaTGAGAAATTAGAGGAGCATGAAGAAAGAACGAAGGTGCAACAGACAGGAGTTAAAACGTGTAGTTCAGAAATAAACTCCACACACTGCAAGTTAACTGACCAAACATAAGCTTGAGTTAACGATGAAAAAGAGAttacacaaaaatattgtgtcCATATAAAACGGAGATCATGTAAAAAGGGCCAACGGGTGAGGGGATCATTTACAGATTGGCATTGGTTTTGGTCAAGAGACAGCCAAGTGCAGATATTGCCTCCAGAGAGGTAatcaatctcacacacacacacacacaccacacacacacacacacacacacggcctaGACACACTGTTGCCATTAGCACTGTGTCCAGTTTTGTTAAGGTgccagcactgtgtgtgtttacaagTGTGATGTGTGCTCAGTCACACATCTCCTCTGGGATCTCATGAGGGTTCAGAATTCCAGGAACAGACATCTGCAGTTTGTGCTTCTCCTCCTGAGCCTGGCGAAGAGATGCCTCCCGTTCCTCCAGAAATAAATCTGTGGTGTCCTCACCTGCGAACTCCTGCAGACAGACAAGATAAATTGAAGAGGTTGtgataaattagaaaaaaa
>TU107586
cTATACATGCTCTCATGTTAACTCGCTCAGATACAGTTATAAAGACGCAGCCTACAATAAACCCATAAATATTTTGaccactttttttaaacttcgACTTAATGAAAGCTCACAAAAGGAGCCACTGTCCTCATTgaggaaaccaaaaaaaaactgatgtcGGTTAAgcgacaacacacacacacacacacacacaataacacaaagaAGAAACATCCACGTGTTCCCCAGGTAATAAAGATGCTATTTGATAGTGACTATTTGTCCATAATAAAGCCACTGCGTTGCACAAAGCATTGCTTTCGAGCCTGGCACAACTGGGATGTTGACGAGACCAAACCGAACAGAATCTATCAGAACttcactcatccatccatctatccatccatcaaaGCTTTATTTACTCCTTCCTGAATCCCCTTCCTTTCTAGTAGGAGAAACATTCTTCTGCAGCCTGCAGAGAGCAGAACTTGCACATCTTGTTCCTTTTCACACATTACACTCGTACACCCCGTTTACACATACAAAGTGATAAGGAATCTTGGCCTATGTCTAAGCAGGAAATCCAAACTGATTTTAGACCTGATTTGTATTAAtcttttaaccccttaaaccacattaaaagtaaaagcatCTGAAGAGCCGTTTAGATTAACTGActtgactactactactactactactactactactactactactactactactactgaccTGTTCTGTtggcagcagttttttttacacagactAGAGAAGCTTGTAGAGAAGCAtgtattatttttctaatatttgCATAATTTTGTCTCAAATAAATTGTGCATTTAGTGTAAACTCAACAGGACATTTGTTGAGTATATTTTAAACTCTCACAAGAGACTGTCAAAGTTAAATGAGGAATAAGGAGCTACTAATACTATGAAATAATGGCAGACAATGACAGAATTGACGCATGCTTAAACAGCAATGATTCATCATTTCCTGTTAATATAAAACCGTTCAGTGCTTTAATATTGTGTACAACAGCCTGACAAACTCACACCGTTAAGATTCGTATATAATTTATATCTATTACCATAAGTGTGTGGAATGCAGCCCTGTAGTACTCAATGACAAAGAAACTGTAGCAGACTACTTATGGAGGCAAAGATTCCTTATCACAGAGTTAATGCGTGCCTTACTGCAAGAGGAAAAAACTGCACTCaatttaatatacaatatacaaaacaaatacatgaTGAGAAATTAGAGGAGCATGAAGAAAGAACGAAGGTGCAACAGACAGGAGTTAAAACGTGTAGTTCAGAAATAAACTCCACACACTGCAAGTTAACTGACCAAACATAAGCTTGAGTTAACGATGAAAAAGAGAttacacaaaaatattgtgtcCATATAAAACGGAGATCATGTAAAAAGGGCCAACGGGTGAGGGGATCATTTACAGATTGGCATTGGTTTTGGTCAAGAGACAGCCAAGTGCAGATATTGCCTCCAGAGAGGTAatcaatctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacg

Function

NR:

description
PREDICTED: galanin receptor type 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107582 True 1837 lncRNA 0.39 2 12038572 12040430
TU107586 False 1573 lncRNA 0.38 4 11955343 12040430

Neighbor

gene id symbol gene type direction distance location
pdzd8 pdzd8 coding downstream 146761 11642590 ~ 11808582 (-)
ttc27 ttc27,LOC107689788 coding downstream 592135 11220363 ~ 11363208 (-)
LOC111193129 NA coding downstream 746659 11205127 ~ 11208684 (-)
rasgrp3 rasgrp3,LOC107744459,LOC107670874,LOC107689794,LOC106576952 coding downstream 1019080 10822882 ~ 10936263 (-)
LOC103040295 LOC108430229 coding downstream 1156541 10790644 ~ 10798802 (-)
rlf NA coding upstream 85397 12125827 ~ 12150716 (-)
yipf4 yipf4,LOC107744423,LOC107670878,LOC106576945 coding upstream 479033 12519463 ~ 12524837 (-)
LOC103024740 LOC103024740,LOC108413681 coding upstream 690196 12730626 ~ 12735104 (-)
LOC103046657 NA coding upstream 781485 12821915 ~ 12835548 (-)
LOC103047466 papss2a,papss2,LOC108411876,LOC105900838,LOC107715960,LOC107583551,LOC107553500,LOC107670849,LOC107689802 coding upstream 881330 12921760 ~ 12950947 (-)
G79849 NA non-coding downstream 28610 11925392 ~ 11926733 (-)
G79844 NA non-coding downstream 38954 11911928 ~ 11916389 (-)
G79809 NA non-coding downstream 150149 11803065 ~ 11805194 (-)
LOC111193191 NA non-coding downstream 158819 11792985 ~ 11796524 (-)
G79806 NA non-coding downstream 165753 11787424 ~ 11789590 (-)
LOC103044551 NA non-coding upstream 22879 12063309 ~ 12064466 (-)
G79941 NA non-coding upstream 95554 12135984 ~ 12136660 (-)
G79960 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 non-coding upstream 182849 12223279 ~ 12374454 (-)
G79974 NA non-coding upstream 241430 12281860 ~ 12282910 (-)
G79991 NA non-coding upstream 323680 12364110 ~ 12364962 (-)
ltbp1 ltbp1 other downstream 771402 10941687 ~ 11183941 (-)
G79582 NA other downstream 1025747 10928640 ~ 10929596 (-)
LOC103027264 NA other downstream 1618627 10294488 ~ 10336716 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 1883459 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 3300326 8650628 ~ 8655017 (-)
G79945 NA other upstream 117156 12157586 ~ 12192028 (-)
ncmap NA other upstream 293969 12334399 ~ 12372804 (-)
edaradd edaradd other upstream 544732 12585162 ~ 12613731 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other upstream 831559 12871989 ~ 12912395 (-)
selenon selenon,sepn1 other upstream 980687 13021117 ~ 13037306 (-)

Expression


Co-expression Network