G79960 (pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512)


Basic Information

Item Value
gene id G79960
gene name pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12223279 ~ 12374454 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107707
aaaaaataaaaataacaaaaagtgttttcaaTCCTCCGCACCCCATGGCCTGCTCCAAGAACACATCGCACAATTTCTTCCACACTTAAAAAGAACGTCAGCAGAGAAAACCAAAGATGGGAGCgccaaataaagagagagagaatgatgaaATAGACTTATGGCCAATACAGCACAGTAGTAGTACATAGAGTCCATTAACTACATAAACATGGCAGTAACACTGAATACTTTAAGTCTATGTACAAAGGTTGCACAGAAGTAGTTTTGGGGTGGAAGGGTGGGTGGgaagaggggaggggggggggggtgtcgtGGACTCTCTCAGGTCTCAGGTTTGAAACATGCCTTTTGGTCATCTGAACGTTTCATTTGAAAAGGGAGGCATTATGGTGTGGTTGAACACCAACAACAGCAGAGCGAGAGAATGGGACGAGTTTTCAAATCGGTTTTACTCTATGCTtgtggttttatttgtttaatctcCCTGCCCAAAACCCTCCCTTCAATTCTTCATCCTGTTTCTTGCTTTTCACcgtacaggatttttttttggacataTAAAAGAACACAAATAAGGCACAATTTCTACTCAGACTGTTTTATCATGGGGTATATGCATCAAAAGGGGGCAGAAGGGGGAGGAATTGGGACAAATAAAACAGTCgacttattttaaattgaaaagaaaaaaaaaaaaaaaaaaaaaaaaaagatttccctTTGTGTTCCAAACAGCCATTCTGATTAACATGTTTTTCTGATAACCtgcatcctcctcctccattgCCACAGAAACCCTGTTTCCCCTTTACCCAAATGTGTACCATCACACTGTGACAACGAAAACTGTGCCACTAAAAGAGCACACTGTATAGTAAATAACCTAAtacttaaactaaactaatgcTTAAGAACCTTCCTCCCTCCCCCTAAACCATTCACAGATCAGCCAACATTGTCAACAACTAGCCTCAAGAATCACTTTTCAAATTTAGAGGGAAAAGTTACCCCAGCTAAAATACAGCCCACCACAAAGCGAGCCTCAAAATGCTGATTAATGGTAGTAGATTAATGGTAGCTgttaaaattaacaaaacaagcaaaaaaaacaaaaatgtgagtGAACCCAGCTGTGTTTCCTGACCCAGTCTTTTaaatcttttcaaaaactgAACCACTGaaccatttctctctctctctctctctctctctccatcccatTAGCACAAGGTTCCCTCTCTTTAACAGTGATGTCCCGACAGAAACAAGTGAACAGAAATCaggttgtttgtgtgtatgtttgggGGGGGTGTGTATGAGAAACATCAGTGTGTTTcattcaacattttaaaaatcatttcaCATTTTCGGCCCGTGACCCAAGCGTGCAGATGTGCAGGATTTAGTGAAAGTCCCAGGACTTGCTTCACTGTGCAGAGGTAAAATGGGATATAAGAAAGGCGGCTGTGGATTGGGGGGGTTTCAGCTAAGAGGAAAAAGATACTCaaccttttttattgtttcagtaGTGGGTTTGATTTGATGGGAAAAGAACTTTGTGAACATTGTGAGCAACAGGCAAATAAACCCCTCCAAAAAGCAAAAAGCTAAGCAAACAGGGTTCTCTCAAGCACAGTCTATGAGAGTGGCTTGTCCAATAAGACCATTCTGCTACCTGACAGGCTTGACTAAAATTTGGCTAATTTGACATGCTTCTCCACTGTCAAAAAAGCACTGACTTTTAAAACGCCCTCTATTAGGAATAGTCTGTGGGAGCTTCTGCTGTTCAGCttctatcaatcaatcaatcacagGGAACCCATTGCACCCATGGTGATGAACTACAGACACAAACATTGAGTTCtttctgtgctaaaacacactcacaaactcaACAACAATCAATCATCACTGGCTTGGTAACGATCAGGCAGGCTCATAAGAACTGGGGTTGAGAACCATTTGGGcaaagagggaaaaaagaaagtaaagatAATGGCAGGAGTTTAAAACAAGGTGTGAACGGATATCTTGAAGTGAGTACAGATTTAATACTCCCATATTAAATGGTGAAACCGCACCACAGCCAGCCCAGCCAGGAGCACGTGGGTGTAGCTCTGTTGCTGCTGAAGGCCTTCTGCT
>TU107708
aaaaaataaaaataacaaaaagtgttttcaaTCCTCCGCACCCCATGGCCTGCTCCAAGAACACATCGCACAATTTCTTCCACACTTAAAAAGAACGTCAGCAGAGAAAACCAAAGATGGGAGCgccaaataaagagagagagaatgatgaaATAGACTTATGGCCAATACAGCACAGTAGTAGTACATAGAGTCCATTAACTACATAAACATGGCAGTAACACTGAATACTTTAAGTCTATGTACAAAGGTTGCACAGAAGTAGTTTTGGGGTGGAAGGGTGGGTGGgaagaggggaggggggggggggtgtcgtGGACTCTCTCAGGTCTCAGGTTTGAAACATGCCTTTTGGTCATCTGAACGTTTCATTTGAAAAGGGAGGCATTATGGTGTGGTTGAACACCAACAACAGCAGAGCGAGAGAATGGGACGAGTTTTCAAATCGGTTTTACTCTATGCTtgtggttttatttgtttaatctcCCTGCCCAAAACCCTCCCTTCAATTCTTCATCCTGTTTCTTGCTTTTCACcgtacaggatttttttttggacataTAAAAGAACACAAATAAGGCACAATTTCTACTCAGACTGTTTTATCATGGGGTATATGCATCAAAAGGGGGCAGAAGGGGGAGGAATTGGGACAAATAAAACAGTCgacttattttaaattgaaaagaaaaaaaaaaaaaaaaaaaaaaaaaagatttccctTTGTGTTCCAAACAGCCATTCTGATTAACATGTTTTTCTGATAACCtgcatcctcctcctccattgCCACAGAAACCCTGTTTCCCCTTTACCCAAATGTGTACCATCACACTGTGACAACGAAAACTGTGCCACTAAAAGAGCACACTGTATAGTAAATAACCTAAtacttaaactaaactaatgcTTAAGAACCTTCCTCCCTCCCCCTAAACCATTCACAGATCAGCCAACATTGTCAACAACTAGCCTCAAGAATCACTTTTCAAATTTAGAGGGAAAAGTTACCCCAGCTAAAATACAGCCCACCACAAAGCGAGCCTCAAAATGCTGATTAATGGTAGTAGATTAATGGTAGCTgttaaaattaacaaaacaagcaaaaaaaacaaaaatgtgagtGAACCCAGCTGTGTTTCCTGACCCAGTCTTTTaaatcttttcaaaaactgAACCACTGaaccatttctctctctctctctctctctctctccatcccatTAGCACAAGGTTCCCTCTCTTTAACAGTGATGTCCCGACAGAAACAAGTGAACAGAAATCaggttgtttgtgtgtatgtttgggGGGGGTGTGTATGAGAAACATCAGTGTGTTTcattcaacattttaaaaatcatttcaCATTTTCGGCCCGTGACCCAAGCGTGCAGATGTGCAGGATTTAGTGAAAGTCCCAGGACTTGCTTCACTGTGCAGAGGTAAAATGGGATATAAGAAAGGCGGCTGTGGATTGGGGGGGTTTCAGCTAAGAGGAAAAAGATACTCaaccttttttattgtttcagtaGTGGGTTTGATTTGATGGGAAAAGAACTTTGTGAACATTGTGAGCAACAGGCAAATAAACCCCTCCAAAAAGCAAAAAGCTAAGCAAACAGGGTTCTCTCAAGCACAGTCTATGAGAGTGGCTTGTCCAATAAGACCATTCTGCTACCTGACAGGCTTGACTAAAATTTGGCTAATTTGACATGCTTCTCCACTGTCAAAAAAGCACTGACTTTTAAAACGCCCTCTATTAGGAATAGTCTGTGGGAGCTTCTGCTGTTCAGCttctatcaatcaatcaatcacagGGAACCCATTGCACCCATGGTGATGAACTACAGACACAAACATTGAGTTCtttctgtgctaaaacacactcacaaactcaACAACAATCAATCATCACTGGCTTGGTAACGATCAGGCAGGCTCATAAGAACTGGGGTTGAGAACCATTTGGGcaaagagggaaaaaagaaagtaaagatAATGGCAGGAGTTTAAAACAAGGTGTGAACGGATATCTTGAAGTGAGTACAGATTTAATACTCCCATATTAAATGGTGAAACCGCACCACAGCCAGCCCAGCCAGGAGCACGTGGGTGTAGCTCTGTTGCTGCTGAAGGCCTTCTGCTGCAGTGGTACCAAAACACCTGTCTGGAGCGTTTAGTTAAGGTGCAGGGTGGGGGAAACCTGGTGTGGGTAATGGGGGTAAATGGGGTAGTCTGGGCAATAAGTGgcaggttggttggatggtAGCGGTCTGAGTCTCAGGCTTTGGTCGCTGTATGGATGGAGCACATCAGTCGTGTTTCAGATGGTCCTTAATGTCCTCCTCGTCTGTGTACTCCGACGGCTCGTCACCGGGCTTCAGCAGACGACCTACATAGTcatatttttccataAACTGCATCTCCCATTCCCTGACACTTTCCATCTGAACCGCATTAAGATCTGACAGGTCATCATACTCGTCCCGCAGTGCATCCTTCTCTAGACAGAATGTAGCCAAACCACGAGAGGCATCCCGGCCCGCAAAAATTCCATACGGACCCTcaCGTCCGTAAAACTTCTTCCCGCTGGTCACGTCAAACACCTTCATGTTGACGGCGATGAGGATGCGCGGGTTCTGCGCCCCGTCGTACTCCCGCAGCTGCTCCAGGGTGAAGTCGCGCCTGCCCATCTTGGGCAACGGCGAGGCCTCGCTGGCCGCGGCCGCGTCCGCGCCCGACCGCCTCAGCCACCGTCTGTACACGACATAGCAGGTGGCCAACACGAGGATTAAAATGCTGAGGTTGAGCAGCATGGCGCCGACGCCGGGCCCCGGATCCAGCTCCTCTGTGCTCGTCGCGCCCTGCCCGCCACTTGTGTcgcctgctgctgctccgctcCTACCATCCCCATCGTCCG
>TU107709
aaaaaataaaaataacaaaaagtgttttcaaTCCTCCGCACCCCATGGCCTGCTCCAAGAACACATCGCACAATTTCTTCCACACTTAAAAAGAACGTCAGCAGAGAAAACCAAAGATGGGAGCgccaaataaagagagagagaatgatgaaATAGACTTATGGCCAATACAGCACAGTAGTAGTACATAGAGTCCATTAACTACATAAACATGGCAGTAACACTGAATACTTTAAGTCTATGTACAAAGGTTGCACAGAAGTAGTTTTGGGGTGGAAGGGTGGGTGGgaagaggggaggggggggggggtgtcgtGGACTCTCTCAGGTCTCAGGTTTGAAACATGCCTTTTGGTCATCTGAACGTTTCATTTGAAAAGGGAGGCATTATGGTGTGGTTGAACACCAACAACAGCAGAGCGAGAGAATGGGACGAGTTTTCAAATCGGTTTTACTCTATGCTtgtggttttatttgtttaatctcCCTGCCCAAAACCCTCCCTTCAATTCTTCATCCTGTTTCTTGCTTTTCACcgtacaggatttttttttggacataTAAAAGAACACAAATAAGGCACAATTTCTACTCAGACTGTTTTATCATGGGGTATATGCATCAAAAGGGGGCAGAAGGGGGAGGAATTGGGACAAATAAAACAGTCgacttattttaaattgtaaaaaaaaaaaaaaaaaaaaaaaaaaaagcaaatcacggcccctttaatccactgaaaaatgttcaatttgctctgaccgacgagacatattcaccccggatttttggtgtttttatcccggatttttgtgttttcaccccatattttttctgtgtttttagcccagatttctttgtgttt
>TU107711
ctctctctctctctctctctctctctctctctctctctctctccatcccatTAGCACAAGGTTCCCTCTCTTTAACAGTGATGTCCCGACAGAAACAAGTGAACAGAAATCaggttgtttgtgtgtatgtttgggGGGGGTGTGTATGAGAAACATCAGTGTGTTTcattcaacattttaaaaatcatttcaCATTTTCGGCCCGTGACCCAAGCGTGCAGATGTGCAGGATTTAGTGAAAGTCCCAGGACTTGCTTCACTGTGCAGAGGTAAAATGGGATATAAGAAAGGCGGCTGTGGATTGGGGGGGTTTCAGCTAAGAGGAAAAAGATACTCaaccttttttattgtttcagtaGTGGGTTTGATTTGATGGGAAAAGAACTTTGTGAACATTGTGAGCAACAGGCAAATAAACCCCTCCAAAAAGCAAAAAGCTAAGCAAACAGGGTTCTCTCAAGCACAGTCTATGAGAGTGGCTTGTCCAATAAGACCATTCTGCTACCTGACAGGCTTGACTAAAATTTGGCTAATTTGACATGCTTCTCCACTGTCAAAAAAGCACTGACTTTTAAAACGCCCTCTATTAGGAATAGTCTGTGGGAGCTTCTGCTGTTCAGCttctatcaatcaatcaatcacagGGAACCCATTGCACCCATGGTGATGAACTACAGACACAAACATTGAGTTCtttctgtgctaaaacacactcacaaactcaACAACAATCAATCATCACTGGCTTGGTAACGATCAGGCAGGCTCATAAGAACTGGGGTTGAGAACCATTTGGGcaaagagggaaaaaagaaagtaaagatAATGGCAGGAGTTTAAAACAAGGTGTGAACGGATATCTTGAAGTGAGTACAGATTTAATACTCCCATATTAAATGGTGAAACCGCACCACAGCCAGCCCAGCCAGGAGCACGTGGGTGTAGCTCTGTTGCTGCTGAAGGCCTTCTGCTGCAGTGGTACCAAAACACCTGTCTGGAGCGTTTAGTTAAGGTGCAGGGTGGGGGAAACCTGGTGTGGGTAATGGGGGTAAATGGGGTAGTCTGGGCAATAAGTGgcaggttggttggatggtAGCGGTCTGAGTCTCAGGCTTTGGTCGCTGTATGGATGGAGCACATCAGTCGTGTTTCAGATGGTCCTTAATGTCCTCCTCGTCTGTGTACTCCGACGGCTCGTCACCGGGCTTCAGCAGACGACCTACATAGTcatatttccataAACTGCATCTCCCATTCCCTGACACTTTCCATCTGAACCGCATTAAGATCTGACAGGTCATCATACTCGTCCCGCAGTGCATCCTTCTCTAGACAGAATGTAGCCAAACCACGAGAGGCATCCCGGCCCGCAAAAATTCCATACGGACCCTCTGAGGGACAAAAACATaagacatttattattatagatatgTCAcacaatttatattaaaaagcaaatttatttattctaacAGGGGATTGAAcggtacattttaaaacatgtttatatacagtactagtcgAGGGTattcaatattttacatttttgcattgtagattaataaaag
>TU107714
attaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagatttccctTTGTGTTCCAAACAGCCATTCTGATTAACATGTTTTTCTGATAACCtgcatcctcctcctccattgCCACAGAAACCCTGTTTCCCCTTTACCCAAATGTGTACCATCACACTGTGACAACGAAAACTGTGCCACTAAAAGAGCACACTGTATAGTAAATAACCTAAtacttaaactaaactaatgcTTAAGAACCTTCCTCCCTCCCCCTAAACCATTCACAGATCAGCCAACATTGTCAACAACTAGCCTCAAGAATCACTTTTCAAATTTAGAGGGAAAAGTTACCCCAGCTAAAATACAGCCCACCACAAAGCGAGCCTCAAAATGCTGATTAATGGTAGTAGATTAATGGTAGCTgttaaaattaacaaaacaagcaaaaaaaacaaaaatgtgagtGAACCCAGCTGTGTTTCCTGACCCAGTCTTTTaaatcttttcaaaaactgAACCACTGaaccatttctctctctctctctctctctctctccatcccatTAGCACAAGGTTCCCTCTCTTTAACAGTGATGTCCCGACAGAAACAAGTGAACAGAAATCaggttgtttgtgtgtatgtttgggGGGGGTGTGTATGAGAAACATCAGTGTGTTTcattcaacattttaaaaatcatttcaCATTTTCGGCCCGTGACCCAAGCGTGCAGATGTGCAGGATTTAGTGAAAGTCCCAGGACTTGCTTCACTGTGCAGAGGTAAAATGGGATATAAGAAAGGCGGCTGTGGATTGGGGGGGTTTCAGCTAAGAGGAAAAAGATACTCaaccttttttattgtttcagtaGTGGGTTTGATTTGATGGGAAAAGAACTTTGTGAACATTGTGAGCAACAGGCAAATAAACCCCTCCAAAAAGCAAAAAGCTAAGCAAACAGGGTTCTCTCAAGCACAGTCTATGAGAGTGGCTTGTCCAATAAGACCATTCTGCTACCTGACAGGCTTGACTAAAATTTGGCTAATTTGACATGCTTCTCCACTGTCAAAAAAGCACTGACTTTTAAAACGCCCTCTATTAGGAATAGTCTGTGGGAGCTTCTGCTGTTCAGCttctatcaatcaatcaatcacagGGAACCCATTGCACCCATGGTGATGAACTACAGACACAAACATTGAGTTCtttctgtgctaaaacacactcacaaactcaACAACAATCAATCATCACTGGCTTGGTAACGATCAGGCAGGCTCATAAGAACTGGGGTTGAGAACCATTTGGGcaaagagggaaaaaagaaagtaaagatAATGGCAGGAGTTTAAAACAAGGTGTGAACGGATATCTTGAAGTGAGTACAGATTTAATACTCCCATATTAAATGGTGAAACCGCACCACAGCCAGCCCAGCCAGGAGCACGTGGGTGTAGCTCTGTTGCTGCTGAAGGCCTTCTGCTGCAGTGGTACCAAAACACCTGTCTGGAGCGTTTAGTTAAGGTGCAGGGTGGGGGAAACCTGGTGTGGGTAATGGGGGTAAATGGGGTAGTCTGGGCAATAAGTGgcaggttggttggatggtAGCGGTCTGAGTCTCAGGCTTTGGTCGCTGTATGGATGGAGCACATCAGTCGTGTTTCAGATGGTCCTTAATGTCCTCCTCGTCTGTGTACTCCGACGGCTCGTCACCGGGCTTCAGCAGACGACCTACATAGTcatatttccataAACTGCATCTCCCATTCCCTGACACTTTCCATCTGAACCGCATTAAGATCTGACAGGTCATCATACTCGTCCCGCAGTGCATCCTTCTCTAGACAGAATGTAGCCAAACCACGAGAGGCATCCCGGCCCGCAAAAATTCCATACGGACCCTCTGAGGGACAAAAACATaagacatttattattatagatatgTCAcacaatttatattaaaaagcaaatttatttattctaacAGGGGATTGAAcggtacattttaaaacatgtttatatacagtactagtcgAGGGTattcaatattttacatttttgcattgtagattaataaaag

Function

symbol description
pgrmc2 Acts upstream of or within oocyte maturation and ovulation. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and membrane. Is expressed in several structures, including digestive system; gonad; heart; integument; and muscle. Orthologous to human PGRMC2 (progesterone receptor membrane component 2).

NR:

description
PREDICTED: membrane-associated progesterone receptor component 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107707 False 2145 lncRNA 0.41 2 12275073 12279251
TU107708 True 2920 lncRNA 0.46 3 12263162 12279251
TU107709 False 865 lncRNA 0.40 2 12223279 12279251
TU107711 False 1568 lncRNA 0.44 3 12271694 12350635
TU107714 False 2063 lncRNA 0.42 3 12271694 12374454

Neighbor

gene id symbol gene type direction distance location
rlf NA coding downstream 72563 12125827 ~ 12150716 (-)
pdzd8 pdzd8 coding downstream 414697 11642590 ~ 11808582 (-)
ttc27 ttc27,LOC107689788 coding downstream 860071 11220363 ~ 11363208 (-)
LOC111193129 NA coding downstream 1014595 11205127 ~ 11208684 (-)
rasgrp3 rasgrp3,LOC107744459,LOC107670874,LOC107689794,LOC106576952 coding downstream 1287016 10822882 ~ 10936263 (-)
yipf4 yipf4,LOC107744423,LOC107670878,LOC106576945 coding upstream 145009 12519463 ~ 12524837 (-)
LOC103024740 LOC103024740,LOC108413681 coding upstream 356172 12730626 ~ 12735104 (-)
LOC103046657 NA coding upstream 447461 12821915 ~ 12835548 (-)
LOC103047466 papss2a,papss2,LOC108411876,LOC105900838,LOC107715960,LOC107583551,LOC107553500,LOC107670849,LOC107689802 coding upstream 547306 12921760 ~ 12950947 (-)
LOC103025372 LOC103025372 coding upstream 581916 12956370 ~ 12967635 (-)
G79941 NA non-coding downstream 86619 12135984 ~ 12136660 (-)
LOC103044551 NA non-coding downstream 158813 12063309 ~ 12064466 (-)
G79861 NA non-coding downstream 182849 11955343 ~ 12040430 (-)
G79879 xpo1,LOC108248917,LOC102788896,LOC107553835,LOC101480205,LOC102296990,LOC103353500,LOC107715966,LOC107689808,LOC101170539 non-coding downstream 203460 12016808 ~ 12019819 (-)
G79871 NA non-coding downstream 219975 12002831 ~ 12003304 (-)
G80047 NA non-coding upstream 165691 12540145 ~ 12543272 (-)
G80060 NA non-coding upstream 208779 12583233 ~ 12583861 (-)
G80105 pank1,pank1a,LOC107689800,LOC107553481 non-coding upstream 408159 12782613 ~ 12791587 (-)
G80125 slc16a12,slc16a12a,LOC107689836,LOC107715954,LOC107744897,LOC107583546 non-coding upstream 443935 12818389 ~ 12818642 (-)
G80168 NA non-coding upstream 538745 12913199 ~ 12975300 (-)
G79945 NA other downstream 31251 12157586 ~ 12192028 (-)
G79865 NA other downstream 251340 11969441 ~ 11971939 (-)
ltbp1 ltbp1 other downstream 1039338 10941687 ~ 11183941 (-)
G79582 NA other downstream 1293683 10928640 ~ 10929596 (-)
LOC103027264 NA other downstream 1886563 10294488 ~ 10336716 (-)
edaradd edaradd other upstream 210708 12585162 ~ 12613731 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other upstream 497535 12871989 ~ 12912395 (-)
selenon selenon,sepn1 other upstream 646663 13021117 ~ 13037306 (-)
LOC111193198 NA other upstream 801582 13176036 ~ 13176676 (-)
LOC103027799 rgs7a,LOC108431643,LOC107583631,LOC107668625,LOC107750853,LOC108269497 other upstream 1451613 13826067 ~ 13919850 (-)

Expression


Co-expression Network