G79871


Basic Information

Item Value
gene id G79871
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12002831 ~ 12003304 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107601
CACGGTTTAATACCTACCGAGATGTCCAAGCCTTTGAAAGAAAGGTCTGCTTTTTTGCCAGCGTTGCTGAAacttaacctagctagctaggttaactagctccAACAGTGTCGGTAGTGGGCTGGCTTAAGCTTTTTTGGTGAGCTGCGATGTGTGGACTCTGCGCTAGCTAGCTGTTacgttagctagcgttagctaacgcTCGCGGTTTTCTCTCAGACTCATTTTACGTAAGTTACGCTTAATAAACAGTTTCCCGCTCTTTTGTAGTTCTCTAAGTATGTGAAAGGATACCTCTTAAATAAAAAGAGTGAGCCTGTgcctgtatctgtatctctctctatctctctctgagtgagtgagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107601 True 364 lncRNA 0.44 2 12002831 12003304

Neighbor

gene id symbol gene type direction distance location
pdzd8 pdzd8 coding downstream 194249 11642590 ~ 11808582 (-)
ttc27 ttc27,LOC107689788 coding downstream 639623 11220363 ~ 11363208 (-)
LOC111193129 NA coding downstream 794147 11205127 ~ 11208684 (-)
rasgrp3 rasgrp3,LOC107744459,LOC107670874,LOC107689794,LOC106576952 coding downstream 1066568 10822882 ~ 10936263 (-)
LOC103040295 LOC108430229 coding downstream 1204029 10790644 ~ 10798802 (-)
rlf NA coding upstream 122523 12125827 ~ 12150716 (-)
yipf4 yipf4,LOC107744423,LOC107670878,LOC106576945 coding upstream 516159 12519463 ~ 12524837 (-)
LOC103024740 LOC103024740,LOC108413681 coding upstream 727322 12730626 ~ 12735104 (-)
LOC103046657 NA coding upstream 818611 12821915 ~ 12835548 (-)
LOC103047466 papss2a,papss2,LOC108411876,LOC105900838,LOC107715960,LOC107583551,LOC107553500,LOC107670849,LOC107689802 coding upstream 918456 12921760 ~ 12950947 (-)
G79849 NA non-coding downstream 76098 11925392 ~ 11926733 (-)
G79844 NA non-coding downstream 86442 11911928 ~ 11916389 (-)
G79809 NA non-coding downstream 197637 11803065 ~ 11805194 (-)
LOC111193191 NA non-coding downstream 206307 11792985 ~ 11796524 (-)
G79806 NA non-coding downstream 213241 11787424 ~ 11789590 (-)
G79879 xpo1,LOC108248917,LOC102788896,LOC107553835,LOC101480205,LOC102296990,LOC103353500,LOC107715966,LOC107689808,LOC101170539 non-coding upstream 13504 12016808 ~ 12019819 (-)
LOC103044551 NA non-coding upstream 60005 12063309 ~ 12064466 (-)
G79941 NA non-coding upstream 132680 12135984 ~ 12136660 (-)
G79960 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 non-coding upstream 219975 12223279 ~ 12374454 (-)
G79974 NA non-coding upstream 278556 12281860 ~ 12282910 (-)
G79865 NA other downstream 30892 11969441 ~ 11971939 (-)
ltbp1 ltbp1 other downstream 818890 10941687 ~ 11183941 (-)
G79582 NA other downstream 1073235 10928640 ~ 10929596 (-)
LOC103027264 NA other downstream 1666115 10294488 ~ 10336716 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 1930947 10034686 ~ 10071884 (-)
G79945 NA other upstream 154282 12157586 ~ 12192028 (-)
ncmap NA other upstream 331095 12334399 ~ 12372804 (-)
edaradd edaradd other upstream 581858 12585162 ~ 12613731 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other upstream 868685 12871989 ~ 12912395 (-)
selenon selenon,sepn1 other upstream 1017813 13021117 ~ 13037306 (-)

Expression


Co-expression Network