RNA id: XM_022673927.1



Basic Information


Item Value
RNA id XM_022673927.1
length 1043
RNA type mRNA
GC content 0.47
exon number 7
gene id emc10
representative False

Chromosome Information


Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 12876778 ~ 12888981 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GCTTCCTTGTCTGTGGTTGCACGCTTCCTGTGCACCGTCCGGACAAAATGGCTCCGCTCAGCTCCTCTTTTATTGCGATCGTTTTTGTGAATATTGTCGGGTTTTACACGCAGTATGGAGACTGTAATAATGGCAGGAGGGTACCAGAAACCATAGAGTCAGACCTCACCGGGTTTTCTGTACCACTGGAGCACTCTTTTGAAGTGGATGATGTGCCGAGGTTCTGGGTTCGTGGAAACATCCAGCTGAAGGCTGGCAGAGAGAAcaatgtctttctctctcaggcgATGCTCTCGGAGAAGGACAGGAGTGTACTTAAGGATGTGGCAGCAGTGGATGGGCTGTATAGGATCAGAATTCCCAGAGTTTCTCTGCAGGctgacagacagacggacagacagtTAGAGGGCTACCTCACCGCCTTTGTCAGAGCTTGCTCCCTTGTTGAATCCCACCTCAGTGATGTCATCACTTTACACACGGACGTCAGTGGCTTCGTCATAGGCGTGTCTATAGTGACTATGCCAGGTGCCTGTAGGGGAGCAGAGGTTGAGGATGAGGTTGATCTGGAAGTCTTTAACACAACCATCAGTGTAATGGCACCAGTCAATGCACCAGCccCAGAGACggcactgtttattgaaaggaTGGAACAAGAAATGGACAAAAAGGGAAAACCCCAGGAGCAGAAATCTTTCTTTGCCAAATATTGGATGTACATTGTGCCCCTCGTCCTTTTCCTCATGATGTCAGGAGCTCAGGATCAGTCTGGAGGCGGAGCTGGTGGTGGCTCAGGCAATGGCGGTGGACGATGATTTCTGTGGCAGCAGGGTCTGTTCGTTGGCAGTCATGTAGTTGtacataataatttaaacaattgAAATTAACATTAACTTAACGCATGCACATATGTGCCGTTCATGTGCATTTATGAACTGATTAAGAACTGATGTTGAAAGATTAATGTAGACTAGTGCTGCTGGTCTGTGTTTTTACTACTGATTTATTGAATAAAATCTGTTGTAAATGATACCTCTACTCTA

Function


GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13675 lncRNA downstream 9069 12867428 ~ 12867709 (-) True G10102
TU13588 lncRNA downstream 209890 12665872 ~ 12666888 (-) True G10036
TU13564 lncRNA downstream 277202 12595671 ~ 12599576 (-) False G10013
TU13565 lncRNA downstream 277202 12595671 ~ 12599576 (-) True G10013
TU13567 lncRNA downstream 304433 12545194 ~ 12572345 (-) True G10015
TU13705 lncRNA upstream 5855 12894836 ~ 12895286 (-) True G10122
TU13717 lncRNA upstream 108993 12997974 ~ 13001256 (-) True G10129
TU13718 lncRNA upstream 112419 13001400 ~ 13002570 (-) True G10130
TU13727 lncRNA upstream 116163 13005144 ~ 13008412 (-) True G10137
XR_002650964.1 lncRNA upstream 124356 13013337 ~ 13017476 (-) False LOC111194169
XM_022673914.1 mRNA downstream 12003 12826988 ~ 12864775 (-) False LOC111193363
XM_022673911.1 mRNA downstream 12923 12826988 ~ 12863855 (-) False LOC111193363
XM_022673906.1 mRNA downstream 12924 12826988 ~ 12863854 (-) False LOC111193363
XM_022673912.1 mRNA downstream 13505 12826988 ~ 12863273 (-) True LOC111193363
XM_022673918.1 mRNA downstream 13508 12826988 ~ 12863270 (-) False LOC111193363
XM_022673985.1 mRNA upstream 204222 13093203 ~ 13096456 (-) False LOC111193378
XM_022673978.1 mRNA upstream 204222 13093203 ~ 13096456 (-) False LOC111193378
XM_022673974.1 mRNA upstream 204222 13093203 ~ 13095173 (-) True LOC111193378
XM_007235389.3 mRNA upstream 260389 13149370 ~ 13292878 (-) True LOC103034410
XM_022673993.1 mRNA upstream 260389 13149370 ~ 13165547 (-) False LOC103034410
TU13662 other downstream 59592 12813025 ~ 12817186 (-) True G10089
TU13252 other downstream 1199065 11677178 ~ 11677713 (-) False LOC103022087
TU13065 other downstream 1532516 11340140 ~ 11344262 (-) True G9632
TU12844 other downstream 2481298 10393462 ~ 10395480 (-) True G9469
LOC111194270 other downstream 2651288 10221156 ~ 10225490 (-) False LOC111194270
TU14251 other upstream 1352080 14241061 ~ 14243794 (-) True G10560
TU14289 other upstream 1730415 14619396 ~ 14656528 (-) False hsd3b7
TU14530 other upstream 2033984 14922965 ~ 14923959 (-) True G10767
TU14606 other upstream 2383774 15272755 ~ 15278437 (-) True G10808
TU14624 other upstream 2396864 15285845 ~ 15286735 (-) False LOC111188178

Expression Profile