G10015 (LOC108432202)


Basic Information

Item Value
gene id G10015
gene name LOC108432202
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 12545194 ~ 12572345 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU13567
CCCTTCAGTCTTGGCCCACAGCAGGTTGGGTCCCAGTACAATGGCGATGTTGCTGGGAGTCATCTTATTCACCTCACTCTCCTGAGCTAGCTTAGCaagaaactttactaaatacCTCAAATTAGCCTTGTTTGCTTTTGGCAAACTGTCACATATCACCCACAGAGCCTGCAGTCGTTTATCTGAGTCAGAAATGTTTGAAGCCTGGATCCACTCATCATACAGCTGGAAGGTCATCAGAGGCTCGGGCAGCTCCCGCAGGTAAGACTTCAGGGCTCCGGCTACAGCGTGAGGGTCGGAGTAGAACTCCTCCAACTGGGAAGTGGAACAGTCCAGAGCCGCCTTCAGCTTCTTTAGCTTAGAGGCTCCTGCAGCGATACGGAACAACCcCTCCTCTTTCATGCCAGTCTCCAGCAGCATCATCACACACGCCTCTATGGGCAGAGCGATTTCTCTGTTAGTGCGTTTCAAATGCTCCTCTAAAGCTGTGCCAAACGCCGGCTTCTCCGTCCACGTATCTTGCTTTGATCTGATGCTGGGCAGAAGACTTTCAATGGAAGCCAGAGATCTTTTGTGGTATTCAGCTTGAGCCTCTAACAACACGACATAATAACAAGCATACTCTCCTTCCTTGGAGGAGAAAGCGTACATGTCAGCAGCCAGCTGATCCTTACATATCTCTACTTTATTATGGGCTTCATCCATCTCCTCCTTCAGCGAGTCGGCTTTAGCAGACATTGCCGGGTTGTTAGTGGCAGTGAGGATCGCTTTGGTGGCCTGAAGGTATCTTGCTCTTGCAGAATCATAATCCAGCACAAGCTTAGCTAGCTGCTTCCTCTGCTTCAAGATATTAGGAATATCCACCTCTGCTAGTTGATTGATTGGATCCAGGATGTCTCTCTCCAGCTGGACCTCGTGTTGGCTCTGTTCATACGCAAGCTTATTTTCAGCTTCTCCACAAACCTCCATTATCTTcCCTATCATAGACTCTTCTCCTAACTGGTTCCATCCTTCCAGCATGGCCTGAGAGAGGCCTGACAGAGGCATCTTTTTATGTCTCTTGTCCACTTCTGTCCCCACATGACCCTGCAGACAGGAGATCATCTTCTTGTGCACATTATGTGAGATCAACCGCACCGTTTCCAAGCGGCGCTCAATCTGCAGAAGGTCATCGCTaagaacttctgttttttccGCTC

Function

NR:

description
PREDICTED: rho GTPase-activating protein 17-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13567 True 1199 lncRNA 0.46 13 12545194 12572345

Neighbor

gene id symbol gene type direction distance location
LOC103031371 LOC103031371,LOC108432163,LOC108275528 coding downstream 28614 12502598 ~ 12516580 (-)
LOC111194168 NA coding downstream 47358 12491884 ~ 12497836 (-)
LOC103032330 tnpo2,LOC108432206,LOC103360699 coding downstream 262019 12251498 ~ 12283175 (-)
tmem104 tmem104,LOC102781590 coding downstream 300385 12154438 ~ 12244809 (-)
LOC103046502 LOC108432211 coding downstream 665868 11875121 ~ 11879326 (-)
slc5a11 slc5a11,LOC107670676 coding upstream 30549 12602894 ~ 12619200 (-)
grid2ip grid2ipa,LOC108432200,LOC108279372,LOC107758114,LOC107670677,LOC107583579 coding upstream 49535 12621880 ~ 12655333 (-)
LOC103033800 ppfia3,LOC108415507,LOC107687647,LOC107551161,LOC107563979,LOC107729434 coding upstream 101864 12674209 ~ 12715714 (-)
LOC103046537 nucb1,LOC108434929,LOC107687629,LOC107729549,LOC107732899,LOC107563981 coding upstream 170006 12742351 ~ 12759670 (-)
LOC111193357 LOC108434909 coding upstream 188924 12761269 ~ 12767631 (-)
G9937 NA non-coding downstream 139021 12346516 ~ 12406173 (-)
G9939 NA non-coding downstream 163898 12376183 ~ 12381296 (-)
G9934 tbc1d16 non-coding downstream 205583 12338532 ~ 12339611 (-)
G9933 NA non-coding downstream 216759 12328092 ~ 12328435 (-)
G9931 NA non-coding downstream 224677 12320300 ~ 12320517 (-)
G10013 NA non-coding upstream 23326 12595671 ~ 12599576 (-)
G10036 NA non-coding upstream 93527 12665872 ~ 12666888 (-)
G10102 NA non-coding upstream 295083 12867428 ~ 12867709 (-)
G10122 NA non-coding upstream 322491 12894836 ~ 12895286 (-)
G10129 mybpc2a,LOC107551135,LOC107729557 non-coding upstream 425629 12997974 ~ 13001256 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 867086 11676154 ~ 11678108 (-)
G9632 atp5h,LOC103042933,LOC103361245,LOC107670447 other downstream 1200932 11340140 ~ 11344262 (-)
G9469 NA other downstream 2149714 10393462 ~ 10395480 (-)
LOC111194270 NA other downstream 2319704 10221156 ~ 10225490 (-)
G9350 rai1 other downstream 2834793 9709792 ~ 9710401 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other upstream 240680 12813025 ~ 12817186 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other upstream 577012 13149357 ~ 13292878 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other upstream 1466513 14038858 ~ 14083107 (-)
G10560 NA other upstream 1668716 14241061 ~ 14243794 (-)
hsd3b7 hsd3b7,LOC106601563 other upstream 2047031 14619376 ~ 14656561 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018466 NA coding CM030135.1 CM030135.1 11542796 ~ 11561823 (-)