LOC103046537 (nucb1,LOC108434929,LOC107687629,LOC107729549,LOC107732899,LOC107563981)


Basic Information

Item Value
gene id LOC103046537
gene name nucb1,LOC108434929,LOC107687629,LOC107729549,LOC107732899,LOC107563981
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 12742351 ~ 12759670 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673860.1
ATCTTCCTGCGTTTGCTTGTTTTCCTGGTTTATATCTCGAGGGCGGCAAGAGTAACAGAGCTGCTGGTTTAAAGCTTATTTATCATCTGTTTCACTGACAGCAGGATAAACAGCGGCGCGGCGCAGCGCGGTCAGCGGACTGTAACGGATTATGGTGGGGGCTTGGCgttggctgctgcttctgtcCATCTCTTTGAGGGTGTGGTCAGTGCCTATTGACCGGAAAACTGATGGCCAGGATGCGCCGCCCCCACAGGAGGAGAAAGCAGAAGAAAATATGGACACAGGTCTTTACTATGACCGCTACCTGAGGGAGGTCATCGAGGTCCTGGAGACGGACCCTCACTTCAGAGAGAAACTACAGACAGCCAACACTGAGGACATTAAAAATGGCCGTCTCAGTAAAGAGCTGGATCTGGTGGGTCATCATGTCCGAACCCGCCTGGATGAGCTAAAGAGACAGGAAGTGTCTCGTCTCAGGATGTTGCTGAAGGCCAAGCTGGACAGCACCAACACACAGAGTGTTCAGATGGATCACGTGTCATTGCTGAAGCAGTTTGAGCATCTGGATCCACACAATCAGAACACATTTGAAGCCAAAGATCTGGAGCTGCTCATTGCTGCGGCCACTAAAGACCTGGAGAATTATGATGCGGAGCGGCATGAGGAGTTCAAGCGCTACGAGATGTTGAAGGAGCATGAGAGGAGAGAATACCTGAAGAGTCTAGAccaggagaagagagagagggaggagaagaggaTAGAGGATCTGAGAGAGAAGCATAGACAGCATCCTAAAGTCAACGCACCAGGCAGTGTTGATCAGCTGAGAGAGGTTTGGGAAGAGACGGACGGTTTGGACCCACAAGAGTTTAACCCTAAAACCTTCTTCAAGCTCCACGACACAAATGGAGATGGTCTCCTGGATGAGCAGGAGCTGGAAGCTCTGTTTACAAAAGAGCTGGAGAAGGTGTACGACCCAAAGAACGAAGAGGATGACATGATGGAGATGGAGGAAGAGCGGCTGAGGATGAGGGAGCACGTCATGAAAAATGTTGACCTTAATCGAGACAGGTTGGTGAGTCTGGAAGAGTTTATCAAATCAACAGAGAAGAAAGAGTTCAACAACGCAAAGGAATGGGAGACACTGGATGACAAACAGCCGGTGTACACTGAGGCAGAGCTCCAGAGGTTTGAGGCAGAGCTCCGGGACAAAGAGGTGGAGCTTAGCAGGAGGGCGGAGACACTGAGACAGGAACAAGAGCTGCTTAAAGAAAGAGGCAAAGCGCTGGAGGCCCAGAAGAAAGAGTACCAGCAGgcTTTAATGGAGATGTCTCAGAGGCAGAAGGATCAGCAGGCAGTGAACAAACCGCCCCCTTCAGGCCCAAACGGAGATTTACAGTTTCAGCAGGAAATTCAGAAACTGGCTCAAGGGGATATTCCAGTTGGAAAGGTGCCAGTTGATCAGAATGGAGAAGTCCAAAACAGCCTGCAGGCCGAGCCACCACAGAACTTTCCCCAGCACACCTAACCTTAACAAATTGCCTCAttaaacg

Function

symbol description
nucb1 Predicted to enable calcium ion binding activity. Predicted to be located in Golgi apparatus and extracellular region. Predicted to be active in endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human NUCB1 (nucleobindin 1).

NR:

description
PREDICTED: nucleobindin-1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20371 NUCB; nucleobindin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673860.1 True 1556 mRNA 0.51 13 12742351 12759670

Neighbor

gene id symbol gene type direction distance location
LOC103033800 ppfia3,LOC108415507,LOC107687647,LOC107551161,LOC107563979,LOC107729434 coding downstream 26637 12674209 ~ 12715714 (-)
grid2ip grid2ipa,LOC108432200,LOC108279372,LOC107758114,LOC107670677,LOC107583579 coding downstream 87018 12621880 ~ 12655333 (-)
slc5a11 slc5a11,LOC107670676 coding downstream 123151 12602894 ~ 12619200 (-)
LOC103031371 LOC103031371,LOC108432163,LOC108275528 coding downstream 225771 12502598 ~ 12516580 (-)
LOC111194168 NA coding downstream 244515 12491884 ~ 12497836 (-)
LOC111193357 LOC108434909 coding upstream 1599 12761269 ~ 12767631 (-)
tbc1d17 tbc1d17,LOC107687627,LOC107729504,LOC107680857,LOC107551157,LOC107563983 coding upstream 18653 12778323 ~ 12806914 (-)
LOC111193363 LOC108434907 coding upstream 67318 12826988 ~ 12864775 (-)
emc10 emc10,LOC107551156,LOC107729566,LOC107687623 coding upstream 117108 12876778 ~ 12888981 (-)
LOC111193378 NA coding upstream 333533 13093203 ~ 13096456 (-)
G10036 NA non-coding downstream 75463 12665872 ~ 12666888 (-)
G10013 NA non-coding downstream 142775 12595671 ~ 12599576 (-)
G10015 LOC108432202 non-coding downstream 170006 12545194 ~ 12572345 (-)
G9937 NA non-coding downstream 336178 12346516 ~ 12406173 (-)
G10102 NA non-coding upstream 107758 12867428 ~ 12867709 (-)
G10122 NA non-coding upstream 135166 12894836 ~ 12895286 (-)
G10129 mybpc2a,LOC107551135,LOC107729557 non-coding upstream 238304 12997974 ~ 13001256 (-)
G10130 NA non-coding upstream 241730 13001400 ~ 13002570 (-)
G10137 NA non-coding upstream 245474 13005144 ~ 13008412 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 1064243 11676154 ~ 11678108 (-)
G9632 atp5h,LOC103042933,LOC103361245,LOC107670447 other downstream 1398089 11340140 ~ 11344262 (-)
G9469 NA other downstream 2346871 10393462 ~ 10395480 (-)
LOC111194270 NA other downstream 2516861 10221156 ~ 10225490 (-)
G9350 rai1 other downstream 3031950 9709792 ~ 9710401 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other upstream 53355 12813025 ~ 12817186 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other upstream 389687 13149357 ~ 13292878 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other upstream 1279188 14038858 ~ 14083107 (-)
G10560 NA other upstream 1481391 14241061 ~ 14243794 (-)
hsd3b7 hsd3b7,LOC106601563 other upstream 1859706 14619376 ~ 14656561 (-)

Expression


Co-expression Network