LOC111193357 (LOC108434909)


Basic Information

Item Value
gene id LOC111193357
gene name LOC108434909
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 12761269 ~ 12767631 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673868.1
tctcccctctTTCTGTCTCCACCTGTTGACTCCATTGTTGAATCGATGGCATTGTGCCTCCTTATTCTTCTCCTCCACTCACTTTACACTCCACTCTTTTATTGCCATGCTCTTTTCTCTGTCTGAGAGGATATAAGGAGGCAGGCTGGAGAGAGAGGATCAGAATCAAAGAAGCACCacagaggaacacacacacacacatacacacacacacactcatacacatacattcatatacatatatacacatacacacaacatacTTACTATATGTGCTCACTTAACACCAGCACTTAATGCAGTGATAGTCCTCAGTGCATCAGCAGTCGCTTactcaaacacactcaaacacacacttaaacacacacttacatctTCACATCTTCATATTTGGAGCTTCAAGGCAGGAGCAACAGGTGTGGAGGAGAGTGGTGGACATCATTCAAGAGCAGGTACAGGcatgtctgtgtctctgtggtgtgaggaggaggaggatgttCAGCCTGTTGGTCACAGAGAATCAGCTTCAGTCCGAGCCCCCCGAGACCCCAACGCTTCCGGCCTGAGAGTCATCCACGGCCTCCTGCGCTCGCAAGACAGATACCTCCCCTCTCCACTCTACACCTCACTCATCCAGAGAGACCCCAAACGCAGAGAGGAACTGGCCAAGTGGACCCTGGagGTGTGCTGTGACTGTGGCAGTGATGAGTCTGTGTTtccgctgtctgtctctctgctggACCGTTATCTGTCTGTGACGCTGGCTCTGCCGGCCTCTCCGTACTGCCTGGCCGCTGCCTGTATCCTGGTGGCCTCTAAGTTGGTGGAGAGTGAGCCGGTCAGTGCAGACACTCTGTGTGCTGCGGCCGAGTACGAGTTCATGTCCTCAAACCTCAGGGAGATGGAGCGTGTGCTGCTGGGAACTCTAAGGTGGGACGTAGCTGCAGTGACCCCTCAGGACTTCATCCCTCACTTCTTATCCTGCCTGGAGGAGCTGGAGGGAgacaacacagagagagacttCATCTCCACCCTCAGACGACACAGCGACACTCTGAcggccatgtgtgtgtgtgactctcGCTTTCTGGGCACTCCGGCCTCTCTGGTGTCTGCAGCGGCCATCAACTCAGCCATCCGGGGACTAGAGTCGAAAAGCCAGAGAGAAATGAGTCACATGACCTTCACCCTGGCTGCGCTCTGTCAGACTgatgtgGCCGTGCTGCAGTGCTACAGTGAGCTGATAGAGGATGCTCTCAGTGAGAGACTGAGATCCAgccaggaggaggaggagcagaaaGAAGGAGGGATGGAGGACGAAAGGTCGAGCACACCCACCGACCTGAGAGAGATAGACTTTTAATACACAGGAAAAGAAGCCATTTAAAGTTCAACTGCAGTCTTCCTCAGAGTCATCAGTGAAACTGATGTAAACCCGCGTTCTGAATGCTGTCTTATCATATTATTTAATTCTTATTTAATATTgactgttatttatttgttttgaggTATTACTGTGccatatttctattttattgccGTCACTGtgatgattttttattattattctacttacctttgtgttgtgttgttgtgtggcATTTTTGCTGTGTGAGGGTCTCTGTTCTGATATGTACTGTTAATTTATTAACtatcaatttatttattctgtggatgcaattttaatttattttatttgcaattattTACTTGATATGACAGTGTCCagtgaaatatatatttcaattaaatcatattttttatctattttcaattaaataatattgaGAAATA

Function

NR:

description
PREDICTED: G1/S-specific cyclin-D2-like

GO: NA

KEGG:

id description
K14505 CYCD3; cyclin D3, plant

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673868.1 True 1794 mRNA 0.47 5 12761269 12767631

Neighbor

gene id symbol gene type direction distance location
LOC103046537 nucb1,LOC108434929,LOC107687629,LOC107729549,LOC107732899,LOC107563981 coding downstream 1599 12742351 ~ 12759670 (-)
LOC103033800 ppfia3,LOC108415507,LOC107687647,LOC107551161,LOC107563979,LOC107729434 coding downstream 45555 12674209 ~ 12715714 (-)
grid2ip grid2ipa,LOC108432200,LOC108279372,LOC107758114,LOC107670677,LOC107583579 coding downstream 105936 12621880 ~ 12655333 (-)
slc5a11 slc5a11,LOC107670676 coding downstream 142069 12602894 ~ 12619200 (-)
LOC103031371 LOC103031371,LOC108432163,LOC108275528 coding downstream 244689 12502598 ~ 12516580 (-)
tbc1d17 tbc1d17,LOC107687627,LOC107729504,LOC107680857,LOC107551157,LOC107563983 coding upstream 10692 12778323 ~ 12806914 (-)
LOC111193363 LOC108434907 coding upstream 59357 12826988 ~ 12864775 (-)
emc10 emc10,LOC107551156,LOC107729566,LOC107687623 coding upstream 109147 12876778 ~ 12888981 (-)
LOC111193378 NA coding upstream 325572 13093203 ~ 13096456 (-)
med25 med25 coding upstream 570370 13338001 ~ 13387939 (-)
G10036 NA non-coding downstream 94381 12665872 ~ 12666888 (-)
G10013 NA non-coding downstream 161693 12595671 ~ 12599576 (-)
G10015 LOC108432202 non-coding downstream 188924 12545194 ~ 12572345 (-)
G9937 NA non-coding downstream 355096 12346516 ~ 12406173 (-)
G10102 NA non-coding upstream 99797 12867428 ~ 12867709 (-)
G10122 NA non-coding upstream 127205 12894836 ~ 12895286 (-)
G10129 mybpc2a,LOC107551135,LOC107729557 non-coding upstream 230343 12997974 ~ 13001256 (-)
G10130 NA non-coding upstream 233769 13001400 ~ 13002570 (-)
G10137 NA non-coding upstream 237513 13005144 ~ 13008412 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 1083161 11676154 ~ 11678108 (-)
G9632 atp5h,LOC103042933,LOC103361245,LOC107670447 other downstream 1417007 11340140 ~ 11344262 (-)
G9469 NA other downstream 2365789 10393462 ~ 10395480 (-)
LOC111194270 NA other downstream 2535779 10221156 ~ 10225490 (-)
G9350 rai1 other downstream 3050868 9709792 ~ 9710401 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other upstream 45394 12813025 ~ 12817186 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other upstream 381726 13149357 ~ 13292878 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other upstream 1271227 14038858 ~ 14083107 (-)
G10560 NA other upstream 1473430 14241061 ~ 14243794 (-)
hsd3b7 hsd3b7,LOC106601563 other upstream 1851745 14619376 ~ 14656561 (-)

Expression


Co-expression Network