RNA id: TU282971


Basic Information

Item Value
RNA id TU282971
length 963
lncRNA type intronic
GC content 0.46
exon number 3
gene id G208518
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 27165176 ~ 27181579 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTTCCCATTgaaatgaatggggggcccagagttccatctcgcacacgagcagctctgcgcacggaaccccttctctcccctgctcctccagtactgtgagtgtatggaggagctgctgtatggagcagctatcagtcaaaagtttggacaccccggcaccccagccagggcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttaacaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagtaaccacctggaaaatgttagcaactgcctaacaaccacttagcacccactttagaaatgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaacattagcaactgcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaatgttagcaactgcctagcaaccacttagcaaacactttagaaatgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacattagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccacttagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccagttagcaacaccttagcaaccatgtggaatataagagcaactgcctagcaacagcttagcaaccacctggtatatgttagcaaccagttagcaacagctTAACGTTTCtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282924 lncRNA downstream 154064 27008167 ~ 27011112 (-) True G208487
TU282918 lncRNA downstream 173248 26991493 ~ 26991928 (-) True G208481
XR_002651794.1 lncRNA downstream 208726 26954767 ~ 26956450 (-) True LOC111195768
XR_002651795.1 lncRNA downstream 213852 26950914 ~ 26951324 (-) True LOC111195769
TU282886 lncRNA downstream 271126 26885476 ~ 26894050 (-) True G208455
TU283011 lncRNA upstream 29391 27206810 ~ 27207649 (-) True G208527
TU283013 lncRNA upstream 30694 27208113 ~ 27210267 (-) True G208529
TU283028 lncRNA upstream 87157 27264576 ~ 27264959 (-) True G208542
TU283037 lncRNA upstream 957722 28135141 ~ 28135342 (-) True G208551
TU283194 lncRNA upstream 1031976 28209395 ~ 28209959 (-) True G208640
XM_022683917.1 mRNA downstream 54138 27108299 ~ 27111038 (-) True LOC111195765
XM_022684353.1 mRNA downstream 211703 26951689 ~ 26953473 (-) True LOC111195857
XM_022684352.1 mRNA downstream 215806 26946294 ~ 26949370 (-) True LOC111195856
XM_022683919.1 mRNA downstream 349717 26792762 ~ 26815459 (-) True kitlg
XM_022684351.1 mRNA downstream 449923 26673606 ~ 26715253 (-) True cep290
XM_022683924.1 mRNA upstream 979348 28156767 ~ 28163353 (-) True tmem231
XM_022683925.1 mRNA upstream 999721 28177140 ~ 28193065 (-) True adat1
XM_022684355.1 mRNA upstream 1038976 28216395 ~ 28268369 (-) True wwp2
XM_022684356.1 mRNA upstream 1133447 28310866 ~ 28367957 (-) True nup160
XM_007241086.2 mRNA upstream 1295102 28472521 ~ 28476854 (-) True rpl27a
XR_002651797.1 other downstream 12876 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 508992 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 952335 26212058 ~ 26212841 (-) False G208046
TU282386 other downstream 952407 26212058 ~ 26212769 (-) True G208046
TU282304 other downstream 1172682 25989438 ~ 25992494 (-) True LOC111195825
TU283202 other upstream 1081885 28259304 ~ 28268342 (-) False wwp2
TU283796 other upstream 2846542 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 2985038 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 2985038 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 3024186 30201605 ~ 30206650 (-) False LOC103038932

Expression Profile