RNA id: XM_022683525.1


Basic Information

Item Value
RNA id XM_022683525.1
length 3504
RNA type mRNA
GC content 0.43
exon number 18
gene id LOC111195712
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 7004048 ~ 7013680 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagctagcaTAACTAGGCTAACTTCCATAGCTGGGCAGCTAAGCTTGGCCTACTTAGCTGGTTCGCTAGCTAATGTAGCTACATGTCTAGAATGAAGATGTGCTGTCGACTGCTTCTGCTTTCATAATGCTGTCATATCTACAGCTATGGTTTGAATGAATTGTTAAGGATCGTTGAGGCTTTCGTGTGGTATGACACGTTTATTTATTCAGCGTTAAAGTTACACCCGGTTGTGGCGCTCAGCTttaactggctagctagctGACTAGCATAACTAGGCTAACTTCCATAGCTGAGCAGCTAAGCTTGGCCTACTTAGCTGGTTCGCTAGCTAATGTAGCTACATGTCTAGAATGAAGATGTGCTGTCGGCTGCTTCTGCTTTCATAATGCTGTCATATCTACAGCTATGTACACATTGAGTCCGAATTGTAAGAGCCAGCTTCTTCTTCCCATTTCAAGATATGGGAAAAGCCTTGCGGTTCAGGAAATCGAAGATACACCTGTTCAAGAAGCGCCCTGGTGCTCGTGCACAGAAGGTCTACGTAGGTGATATTCTTTCGAGTGTGGGCACTTTCCATCCATCAAGAGATCAGGATGAGCCTCCCGAAATAGCTGAGAGCAGTAACTTATGTTCTGAGACTGCATACACAAAGGCTAAAAGGAGAGAAATAAGTGCCTGGGATCTAGTCAAGGATGATATTTTGAAGGTGTCATTTGCATGTTCAGCACCAATCACAGGTCTCTGCATTGTCTGTCAAGACCATGGAGACTACAGATGCTTGGACTGTGGTCCCACCACAGTTTTTTGCGAGGCTTGTTTAAAAAAGTCACACAGGAATTTGCTGCACCTTCCCGACAAGTGGAATGTAAGGTCAAAAGCTAAGGCCTATTATGAACCCCTTTCAAGTGGTTTACAATTAATTTTACCTGAAGGGCATGAAAACCATAATGTTTATAAAAGGGAAATGAGAGTTGTTGTCAATTCAGGGAGACTTTGCAACATCTGTGTCAATCTCTGCAATTGTGAACCTGAAGTCTGCACCTTAGTAAGATATGGACTATGGCCAGCATCTGCAGAGAAGCCCCAGACAgccttctctatttctcttttagaactttttatttttttatctttggaGTGTCAGGTATCAGTTGATGGCTTTTGTAACACCCTGCGCTGGAAAAACAGCCTCACCCTTGCAGAGGTGAATATGTTGTACAGAGCTTTGGTAGGTGAATCCATATCCTATTTTAGGCACCACTGCTTTCGACTTAGAACTTTGGTTGATCTCTGCCCTCAATTGAATGATGGAGGCACATGTCCTGCTTGCCCAAAGcAAGATGGAAATATGATCGTAACACTTGATGGGAACTTTGGACTTGTACGAAAACAAAGTTCAGGGGCAAGCATAGATAAACCATTTCATGGAAACCGTATGTTTATTGGTGATGGTAGAATAGAGGAATACCTTTCGTCACATCCCGAAAATTCCAAACCTAATGAGgaTTGCAGTAACTTTAAGGCTGGAAACCTCCTGAGGTCAGGAAAGCAAACAAAGAAGCTTGATGTTACCGGTGTATTCGGGGCCTCTTGTCGTCATGAAATTCCTCTTATGTTTGTCAACATGAGCCAGGGAGAACGGTTAGCCTATCCCCTCTACATCATCGAGGAGTTGCTCCAAAAATGCAACACAAAGAACATACACCTGCGAGTAGTCTATGACATTGCATGTGTTCTTGCCTCCCATATGCAGAAATCCAACCAAGGCATACCACACAACCTGTCTCTGGCTGTACCAGCATTTCATGTTTATGGTCATAAACTGCAGTGCCAGATTATGTATAGCACCAGGAGGCTTGATGGATTTGGGCTTACTGATGGTGAAGGAATGGAAAGACTGTGGTCATTCCTTAGAAGGTTTGCAAGAATCACAAAGGAAATGACTCCATCTCATCGGATGGATCTGCTTACAGATGCCCTCCTTCATTATGGATGGAGAAAAGCTACTGACTTAGATATGCAGCTTCTGCTGAGAGTTGAAAAGGCAGAGAAGATGACCGTTGTTGCCAAAGATGAGATCTCCATGATCATCAGAGAGGCACCggtgccGGTCTCTGAGCAAGACATGGAGAGATGGAAGAAAACTGAGGCAGAGCTCGTCCGACAGAAACCAAAACCTAAAAATACTGTGCCAAGATGGAGAAAGGAATATGTCATCAAGCTGATTCAGTACAACATGCTCAATAGGTCTGAGGCTGAAGAGTCATTTGCAGATATAGCAGAATTTGAGAAAACCTTGCTGAATTGGGAGGAGAAGTACTGCATAGGGAAAAGGTGGCATGAACGTGATGTGATCTTTCAGTCTACCCTGAAAGATGTTGACTGTGACATCAGAAGACAATTACTGTTCAAAGCTAGAACtgaagcaagagagagagctgtCCTCTTACAGCTCAAAAGAAAATATCCAGATGGCCAGGGCATTGCCATTAGACTTTCCAAGCAAGTTGCAAACACCAACAAGAGACTCAAGCAGACACTAAGCCAGTACAACAACATTCTCTGGCCACCAAAGACTGATGTCTTCCCTGCAACCATGAGTTTTCAGGACATATGTGACCCATCTTGGCCTGTCTATTCCCTCCTGGATGAAACCATTGGAGATGGTGATGATTCTGTTCCTAGATGTTTAAAACGACGTGGGATCGATGCAGTATACATGAAGGCCCGGGCTGCTGAAGAAAAGGTCTTGGTCCATCAAGAAATGAAATGTGTAATTGATCACCTTCATCAGCAACATGCTTTTCTCCATTCTGCTATCATTTCAACAAACGAGCCTGGTGCGAAAGCTGCATTAATCCAACGCATCATACAGCTGGAAAGAAGATTACATTGTGCCACACATGCGTTTCATCATCATGTACCACATATTCCTTCTGCTCCATGCAATTACATAACTCCAGGTGGACTCCACCACACTGTGCCACTGCATGAAATAGAAACACTTGATGGtgatgaggatgaggaagaggatgaggatgatgacTGACTACAATGGCACTAATGTTGACACTGAAAAGACTATAAATGGGTTATTCTTGCGTTTCACCAACTGAACCCTCCACCCCACACTGATCATACAgaacattgtgtatttttacaaATCTGTATctatttctctgcatactttatgctcttttcaatggtcaggaccccataggatagaccaccacagaacaGCTGATACTATTTGTGTGGCTTGTcacttggatggatggatggatagatggatagatagatagagcatATGCTGTTTTGATGATTAGTATAAAAGGTTGTTTTTATCAAATTCTGATGCATTACATATCCAAAATGTCATTCTTTATGCACACCACTTTAAATTGTACATATAAATAGGAGCAATgcaatgtattaaataattttgtgCAATTCCAACTACTGTATATTGAAATAAACTGATGTTCTTAGCTTTTGTCAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276589 lncRNA downstream 212057 6649911 ~ 6791991 (-) False map1lc3b
XR_002651748.1 lncRNA downstream 226935 6773828 ~ 6777113 (-) True LOC111195711
TU276604 lncRNA downstream 248680 6747283 ~ 6755368 (-) False map1lc3b
TU276584 lncRNA downstream 262689 6614604 ~ 6741359 (-) False map1lc3b
TU276586 lncRNA downstream 262689 6683717 ~ 6741359 (-) False map1lc3b
XR_002651849.1 lncRNA upstream 26240 7039599 ~ 7040273 (-) True LOC111195828
TU276702 lncRNA upstream 380455 7393814 ~ 7394180 (-) True G203919
TU276737 lncRNA upstream 695109 7708468 ~ 7743572 (-) False LOC107197584
TU276735 lncRNA upstream 713692 7727051 ~ 7743572 (-) False LOC107197584
TU276752 lncRNA upstream 754429 7767788 ~ 7768285 (-) True G203963
XM_022684319.1 mRNA downstream 248665 6738765 ~ 6755383 (-) True map1lc3b
XM_015602660.2 mRNA downstream 330120 6594378 ~ 6673928 (-) True jph3
XM_022684317.1 mRNA downstream 546509 6444206 ~ 6457539 (-) True LOC111195822
XM_022684316.1 mRNA downstream 559598 6435530 ~ 6444450 (-) True LOC111188205
XM_022683516.1 mRNA downstream 568075 6432385 ~ 6435973 (-) True LOC103037435
XM_022683535.1 mRNA upstream 443380 7456739 ~ 7743177 (-) True LOC107197584
XM_015605382.2 mRNA upstream 585786 7599145 ~ 7743177 (-) False LOC107197584
XM_022683536.1 mRNA upstream 585791 7599150 ~ 7743177 (-) False LOC107197584
XM_007247479.3 mRNA upstream 1216732 8230091 ~ 8246950 (-) True LOC103028028
XM_007247477.3 mRNA upstream 1543039 8556398 ~ 8566032 (-) True fnta
TU276577 other downstream 399570 6603676 ~ 6604478 (-) False jph3
trnai-uau_43 other downstream 471519 6532437 ~ 6532529 (-) True trnai-uau_43
trnai-uau_42 other downstream 472380 6531576 ~ 6531668 (-) True trnai-uau_42
trnai-uau_41 other downstream 473369 6530587 ~ 6530679 (-) True trnai-uau_41
trnai-uau_40 other downstream 473917 6530039 ~ 6530131 (-) True trnai-uau_40
TU276738 other upstream 610724 7624083 ~ 7648886 (-) False LOC107197584
TU277526 other upstream 3630895 10644254 ~ 10644687 (-) True G204584
TU277652 other upstream 4569841 11583200 ~ 11584074 (-) True G204671
TU278618 other upstream 6720354 13733713 ~ 13739921 (-) True LOC111195729
TU278646 other upstream 6759958 13773317 ~ 13777621 (-) True G205375

Expression Profile