RNA id: TU48397


Basic Information

Item Value
RNA id TU48397
length 965
lncRNA type sense_over
GC content 0.28
exon number 2
gene id bnip3
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12111690 ~ 12566941 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatatatatatatatatatatatatatatatatatatatatatatatatatatataatatatgagtttctcattttaaactgaactaatgtataataaagtaacttttttaatgatattctaattttttgagatgcactagtactgtatatatatatatatatatatatatatatatatatatatatatatatatatacagggtaGGACTGCACAGGTACCAAAAACGCTTGTTCTCAGTGAAAGGACTGCAACAGTGTtcaataatgcaaaataatgcaaaatgtaACCCatgttgtgaaaaaaaaaatattttttttttctgttaaaagaaaaagaaaaaacaagaaactaaacccTAATTGTCTTTGCACAAAAGCTGCACTAAAGCagccttactttttttttttatttctcaatgGAAAGAATTTAAAAGggattttcactttatttttttagaggaTTTTTGCTTAATTACATGCTATCAAGTGTGttaaacctcactcacaagataacacctcacaacttacacaggtgttGTGTATATATAAGAGCCCCTGGCCCCATCATCACTGCTCTAAAGTACTGATTTTATTAAACCCATGCTATTGAGTCCCTTTTAATGAGAAAATGAGTAAAGTTCCCCTTTACAAGTTTGCCTtatattaaactgaattaaagatCTCGTGATCTTTTCTGGATCTTCTCTGGAATCTTCTGAAGATCAAAAACTTCATCTTTAAACTAAATGCAGTTGTTAGATTGCCTTTAGCTGCtgctgtgatgatgatgatgatgatgatgatgatgatgactgtTCACTGGAATAAGGCAAGGAGATAAAAAGGGAATCCCTGTgtgattattaattttataattattattattttttgtgcatgtttttttttagtgtgtagaaaatgttcagtgtttatgTGGCAGTTCTGGTTTTGTATTAAAAGTGgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48423 lncRNA upstream 86895 12459774 ~ 12461856 (+) True G35971
TU48343 lncRNA upstream 476351 12070195 ~ 12072400 (+) True G35931
TU48313 lncRNA upstream 697411 11851124 ~ 11851340 (+) True G35913
TU48312 lncRNA upstream 699003 11849532 ~ 11849748 (+) True G35912
TU48308 lncRNA upstream 726443 11821892 ~ 11822308 (+) True G35908
TU48430 lncRNA downstream 2237 12569178 ~ 12569580 (+) True G35977
TU48426 lncRNA downstream 3172 12570113 ~ 12572345 (+) True G35973
TU48427 lncRNA downstream 6974 12573915 ~ 12575448 (+) True G35974
TU48456 lncRNA downstream 19957 12586898 ~ 12602796 (+) True G35984
TU48463 lncRNA downstream 102981 12669922 ~ 12670148 (+) True G35990
XM_022669102.1 mRNA upstream 454020 12073363 ~ 12094731 (+) False glrx3
XM_022669103.1 mRNA upstream 454020 12073363 ~ 12094731 (+) True glrx3
XM_022669082.1 mRNA upstream 1331379 11184890 ~ 11217372 (+) True ptpre
XM_015608531.2 mRNA upstream 1505858 11040698 ~ 11042893 (+) True foxi2
XM_022669432.1 mRNA upstream 1547201 10747637 ~ 11001550 (+) True dock1
XM_022669110.1 mRNA downstream 37016 12603957 ~ 12664928 (+) False jakmip3
XM_022669109.1 mRNA downstream 38523 12605464 ~ 12664928 (+) False jakmip3
XM_022669111.1 mRNA downstream 39067 12606008 ~ 12664928 (+) False jakmip3
XM_022669112.1 mRNA downstream 39298 12606239 ~ 12664928 (+) False jakmip3
XM_022669118.1 mRNA downstream 39298 12606239 ~ 12664928 (+) True jakmip3
TU48418 other upstream 177789 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 746547 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 1546946 10994361 ~ 11001805 (+) False dock1
TU48150 other upstream 1547212 10994361 ~ 11001539 (+) False dock1
TU48092 other upstream 2072968 10473374 ~ 10475783 (+) False G35744
TU48468 other downstream 135364 12702305 ~ 12703056 (+) True G35995
TU48945 other downstream 1896196 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 2222439 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 2865890 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 4433441 17000382 ~ 17018884 (+) False sun1

Expression Profile