RNA id: TU49450


Basic Information

Item Value
RNA id TU49450
length 3271
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G36707
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15882457 ~ 15885873 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaatattattattgtttttgacACAGATATTTACATACATGCATTTAACATTTATgttagggcattttcacaccagcactatttggtccagttaaaacaaactgaattatgcctgtgtgaaaccaaaccaaacagagggggAAAACGCTAGAAGTAAGCAAATTCATCAACTGATCTGAACCAGAGAAGCAAACTACAGGTGTTGTTGGATTACGATTACGATCCAGCTTGTTCCAGGACAAACTAAACCCTGctggttttaaaatgaaataaaattctaCGATTTTAAATTACAGTACCTGAGCTTTAGGTTCTGCTGTGCTCTCCTCTTTAGTGCTGTCCACTGCTGCCTCTCTGCTCACTTCCTCCTTCCCAGAATCCTTTGCTACTTTGCTCTTCAACTTGGTGGTTGGCTCCTGGTCCTCGGGCAGTGAGCCAGCTTGGGCCTGGTGCTGAGGATGCTCTCCGTTCTGCTTCTCGGCTTGCAGTTCAGGGGAGGAGGATGTGGGCTTTTGGCTGCTCTCTTTCTGTGCATCGGTGCGCAGTCCTTGACCTGAAACCGACGTCTCCTTTTCAGTGCTGGCCAGCTCGCTTTGCAAACCTGTGAATGAAGATGACAACTCCTTTTCTGCCTGCTCCACTTGAGACAGAATCTCCTGCACTCTTTCGTCTGTTATCTCCACATCCTCAAAGCCTTCCTCCCGCTTAATGTCCTCCAGAAGAGACTTGAGCTTCTCCTGGGTCAGCTCTTCTTCTCCTTCGTCAAAACCAGACCAGCCGCTCTCACCCTCTCTCGGCTCACAGACCTCTGGTTGAGGTACTGCGGGTTGGGTGAACACCTCTGAGTCTTTGAATGCTTCCTCACTCTCCTGGGCTCCCAAGAACGCCATAGACTCAGAGCCGACTGCCATGTCTTCCTCTCGACTGCAGGACTCTCTACCTCCCAGGTGGGTGTCCTCGGCTACAACGGTAGGGGGGGTCGCATTGGAGGAGGAGGCTGCGTCCATGGAGGTGGCGGGCAGGGACAGTTCACTGGGTCTGATAGGGGATCTACCGGGAGAGACTACACTACCGTCCTCGCTAAAGAAATCATCCTGTCGGAGAGGGGTGGGGGGCTCATAGTTCAACTCTGTGGGGCTCTGCAGCTCCAGATCGATGCTGTGGTAACCTGAGTGACACAACACAGTGGGACTGAGGTGGACACAATGCACAATGCCACTACCAGAGCAACAGATGGAAGATGGAGATGGAGGCACAAACAACAACAGGGTGGTTTAACAAATCATGGAACAGgagaatgaaatgaaattaaaagtGAAATGGAAGGACCCTTATGTGGCCTTTTCTGAAATTTCCTTCACAATTGCACTATTTACTATTAGAAATGTTAGTTTCACAGTACCAAATCATTTATatagtaattactgaataataatcCTTAAATAATCACTGAAAATGCTTATACTTACAAGTATTCAATGTGGAAAAGATAAGTTAACCAATTATCCAAATGAATTTAtctattatttcagccattcggTATGCGGCAGACCATTAATCAGTTATAAAGCCTGTTTCCACAAGTTATTTCAATCTGTTTTCATGTTAAACTTTAAATGTAAAGTTCAGGAACAGAAGGGTCCTGATGTAAATGAAAGGGAATGGATGAAACAGAGTCAACACACAAAGAAACATGACTGGAACATGGAGGAACAGATAACACAGAGACGGATGCAGTAGATAAAGAACTGGTAAAAGTAGGATAAAGGATATCGGGAACAATCAAAGACACTAGGGTGCAGAGAATGGAGGAAAGAAAATCAGAAACATGACTTGACAATGAAGATGATAATGCAGGGTTACTGATGAATAATGAATATGAGTATAAAGAACCTGATGATGCAACGTTAGCAATGTTCGAGCCGAGCTAGCAGTAAGGAGTAAGGCGCTGCAGCTGGAGTTAGCATTATTGTTAGTGCAGCTACAGGCACTAGATTTAGCACAGTTAGATAGTGGATAaatgagagtgagagcgagagagagagagaggaggcagtAGCATCAATGCTAAAGTGGcaccccacagcatgatgacaGTGGTAGGAAGGCAGAGGCGCTGCTGTGGGAACGAGCGGCCTAGAAAGGGCTAGAAAGAGCAGCAGGTCTGGTTTTGCAGAAAGAGATGCTCTAGCAGGAAGGTTCAGAGGCTGGGACTCTATAGAGAACTATGCAGCTCCACTACAGGCATCAACAAAGCAGACATTCCACTTATGCCATGCTCTCAGAACAGCTGGGTGAGAGAAAGCTGTAGTATTACTGTATTCTTGTGGAAAAGAGAGTCCAAAGCGACCATGCTCTATTGTATTATTAGAAGGTTCACACAGTGAGAGTGGTGCTGAGAATGCTGCAGATGTTTTGGCAACTATGTTTAGCATAGAATGCTgcaataaaatcatataaacaTATAGTTTATATCAAGAATAAAGCACAAACCAAACCTTAAGCCCATCTTGTGTTATCAAGTTATGGCTATAATAGATATGGTAAAAAGAGTCCAGACAACCGTATATATtgtgtaggaaaaaaaatattgtagctAGTTATGCTCTCAcatctttatattatatatattttattgagatgGGCTTACGTTTTGATTGTCAAAGGCTTATGATATTCATAGCTGCATGCCTTATTGCTTTACAAACATATACAATCAATCCATACAGTTAAACACACAATAGAATCACACTGCCCATCGCTGGTACAATAAGCCACACCAGGATGAATAACTGGCAGCTAAAATTGGAGGATCAAAAAATCGAATCAATACCTTGAGAACGAATTTCGAAGtttcaaaagaagaaaaagattgGAATTTTGGATTTGAATTTAGAGCAATAAGTGTTTAGCCTTTATGATTTTCTACTTCtagaaagatcaaagaaagaaacaaaaggaGAAATAGAGGTCAGCTAGATGGGGCTAAACTTTACCATCAGTCTGATCCCGGAAAACTGCGTTATCATCTGCAAAACACCTTGTGCCTGAAATGTTACCATAGTCAAATATTGGCCCTTCCAGCAATGTCACAATATCCATCCGATTGATCTTTGTCAGCGCTGCAGTTAAGACATCCGCTAAAAtaggagacaaaaaaaaaaacaaaaaaagaacacagagaGTAGCATGTTAGACTGAAGCTTCAATTTATTCTGTCCGTAGCAATAATATGGCAGTaggttttttttggttttttgtTTTGCTGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49451 lncRNA upstream 3150 15872548 ~ 15879307 (+) True G36708
TU49449 lncRNA upstream 6573 15874414 ~ 15875884 (+) True G36706
TU49299 lncRNA upstream 107867 15748774 ~ 15774590 (+) True G36618
TU49251 lncRNA upstream 203137 15608092 ~ 15679320 (+) True G36584
TU49244 lncRNA upstream 334931 15541114 ~ 15547526 (+) False G36582
TU49448 lncRNA downstream 11308 15897181 ~ 15898165 (+) True G36705
TU49464 lncRNA downstream 36899 15922772 ~ 15924714 (+) True G36721
TU49465 lncRNA downstream 38912 15924785 ~ 15925847 (+) True G36722
TU49574 lncRNA downstream 325172 16211045 ~ 16211697 (+) True G36783
TU49583 lncRNA downstream 327917 16213790 ~ 16214822 (+) False cabcoco1
XM_007255131.3 mRNA upstream 70604 15808205 ~ 15811853 (+) True LOC103023844
XM_022669181.1 mRNA upstream 210013 15621311 ~ 15672444 (+) True LOC103033971
XM_007255145.3 mRNA upstream 361863 15472044 ~ 15520594 (+) False LOC103028270
XM_007255127.2 mRNA downstream 263965 16149838 ~ 16175195 (+) True rhobtb1
XM_022669188.1 mRNA downstream 263965 16149838 ~ 16175195 (+) False rhobtb1
XM_022669189.1 mRNA downstream 263965 16149838 ~ 16170961 (+) False rhobtb1
XM_022669190.1 mRNA downstream 270473 16156346 ~ 16175195 (+) False rhobtb1
XM_022669191.1 mRNA downstream 275380 16161253 ~ 16175195 (+) False rhobtb1
TU49230 other upstream 442304 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 1091624 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 1418818 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 3179401 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 3316486 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 1114509 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1114509 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1116567 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 1315624 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 1347006 17232879 ~ 17234550 (+) False cby1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2670129 True 749 lncRNA 0.39 1 NW_023493660.1 389446 ~ 390194 (+)
striped catfish (Pangasianodon hypophthalmus) TU227843 True 10305 TUCP 0.41 2 NC_047606.1 7605981 ~ 7628111 (+)
tiger barb (Puntius tetrazona) TU227843 False 1033 TUCP 0.48 6 NC_056721.1 1499714 ~ 1525747 (+)
mexican tetra (Astyanax mexicanus) TU227843 True 313 lncRNA 0.50 2 NC_035915.1 17708599 ~ 17710150 (-)