RNA id: TU51586


Basic Information

Item Value
RNA id TU51586
length 357
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G38257
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21359154 ~ 21359562 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attatgagcaggaggtcgccggttcgaaccccagctcatgcagctttgccatcaagctgccggcgttagagggagcaaaattggccctgctccctctgggtgggtagatggcgctctttccccacatcactcctatgctgtgctttcctccaagtgcgctggctgctcggcaatgctgcatcggcagcagctcgaaaagaagcggtggctgacttcacatgtatcggaggaagcatgtgttagtcttcaccctcctggtgtgttgaggtatcactagtgatgggggagtcctaatgaatgggttgggtaattggctgtgtaaattggggagaaaatgggaaaaattagaaataaaat

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51546 lncRNA downstream 34994 21321709 ~ 21324160 (-) True G38231
TU51579 lncRNA downstream 41809 21317103 ~ 21317345 (-) True G38252
TU51567 lncRNA downstream 67950 21289848 ~ 21291204 (-) True G38246
TU51557 lncRNA downstream 79715 21264937 ~ 21279439 (-) True G38239
TU51536 lncRNA downstream 218042 21140719 ~ 21141112 (-) True G38222
TU51638 lncRNA upstream 224054 21583616 ~ 21608302 (-) True G38291
TU51651 lncRNA upstream 419090 21778652 ~ 21778910 (-) True G38302
TU51723 lncRNA upstream 480232 21839794 ~ 21840799 (-) True G38342
TU51725 lncRNA upstream 484501 21844063 ~ 21852337 (-) True G38344
TU51744 lncRNA upstream 590989 21950551 ~ 21953218 (-) True G38356
XM_022669339.1 mRNA downstream 9734 21324428 ~ 21349420 (-) True tbc1d12
XM_022669445.1 mRNA downstream 38603 21296715 ~ 21320551 (-) True noc3l
XM_007232867.3 mRNA downstream 253847 21082664 ~ 21105307 (-) True LOC103035971
XM_022669332.1 mRNA downstream 311141 21044501 ~ 21048013 (-) True rbp4
XM_007232862.3 mRNA downstream 328987 21019121 ~ 21030167 (-) True kif22
XM_007232870.3 mRNA upstream 1676 21361238 ~ 21390673 (-) True LOC103036789
XM_007232880.3 mRNA upstream 34226 21393788 ~ 21404557 (-) True LOC103039938
XM_022669343.1 mRNA upstream 121199 21480761 ~ 21579767 (-) True LOC103040573
XM_022669344.1 mRNA upstream 121199 21480761 ~ 21577648 (-) False LOC103040573
XM_015603797.2 mRNA upstream 276528 21636090 ~ 21644027 (-) True LOC103029147
TU51149 other downstream 1533502 19818268 ~ 19825652 (-) True c4h10orf128
TU50715 other downstream 2724056 18633578 ~ 18635098 (-) True G37616
TU50696 other downstream 2785978 18572691 ~ 18573176 (-) True G37603
XR_002649891.1 other downstream 3041197 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 3563168 17789951 ~ 17795986 (-) True vps25
TU51712 other upstream 513758 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 2105657 23465219 ~ 23510619 (-) False LOC111192393
TU52261 other upstream 2323564 23683126 ~ 23692337 (-) True fam13c
TU52289 other upstream 2475518 23835080 ~ 23960895 (-) False G38791
TU52519 other upstream 3017114 24376676 ~ 24385304 (-) False LOC111192423

Expression Profile