RNA id: XM_022669290.1


Basic Information

Item Value
RNA id XM_022669290.1
length 2476
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC107197613
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19062857 ~ 19124736 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCTGCGACTTGACAGATGAGCTCGTGCGGATGGATGGattatggattttttattttgtgtgttgcaggtgtaataaaaaaaagtgataacAACAACAGCACCACGTGCATCAGCTGATTAAGGACCTTGCTGATAATGCGCGTGCATCTCACTGTTTTTTGATCGTGAACTCGCGCGCTCTTGGTTGgaaactatttttttgtgtgtgtgtgtgtatatgtgttttagCGCGCGCGCGGGTGCGTGCGCGCGTGTGTAGCATGGCCGCGGCTCGCGCTGCAGCGTCATGGTCCCGGAGCGCGCGCCCGGCCGGGTGGCGGTGAGGAAGCAGCTCGCGCTCATGCTGCTCTCGGCGCTCGCGACCCTGTGCGTGCTGCAGAGCCTCGCGGTGACCTCCGCGCGCGCGCCCGCTCCCGCCGAGGCACCGGCGGCACCTgcggcagcggcggcggcagcgTTGGCGGGTGGAGGCGCGCGGTGGAGCGCGCGCAGGACGCTGCTGAGGCCGGAGGATGACGGGACGAAACGGCTGCCCCAGGCTCTCATCATCGGCGTGAAGAAGGGAGGCACGCGCGCGCTGCTCGAGTTCCTGCGCGTGCATCCCGACGTGCGCGCGGTGGGAGCGGAGCCGCACTTTTTCGACCGGAACTACCAGAACGGTCTGCAGTGGTACAGAGACCTGATGCCCAAAACACTAGAAGGTCAGATCACCATGGAGAAAACTCCTAGTTACTTTGTGACCCGCGAGGCTCCAGCCCGGATCTACGCCATGTCCCGGGAAACCAAGCTCATCGTGGTGGTGAGGGACCCGGTCACTCGGGCCATCTCGGACTACACCCAGACTCTCTCCAAGAGGCCGGACATTCCCTCTTTCGAGAGCCTGACCTTCAAAAACAGGACTACGGGTCTGATCGACACCTCGTGGAGCGCCATCCAGATCGGCATCTACGCCAAGCACCTGGACAACTGGCTCCAGTACTTCCCCATGAGCCAGATCCTGTTCGTCAGCGGAGAGCGGCTGATCAGCGACCCGGCCGGAGAGCTGGGCCGGGTGCAGGACTTCCTGGGGCTCAAGAGGATCATCACGGACAAACACTTCTACTTCAACCAGACCAAGGGCTTCCCCTGCCTCAAGAAGGCTGAGGGCAGCAGTAAGCCCCACTGCCTGGGCAAAACCAAAGGGCGGACCCACCCCAACATAGACCCTGAGGTCGTGCAGAGACTCAGAGACTTCTACAGACCCTTCAACATGAAGTTCTACCAGATGACTGGGAGAGTGTTTGGCTGGGACGATTGATGATTGACCGAGGAATCAGCTTAaggaaaaaacgacaaaaacGTTCACTGTGAGATATGCTTGAGGACAATGAAAATGTCTCCGTAAAATGAATGCACTTATACAtgcatttttagtgttttaagtGCGTCATTTATCTCACCAGCAACAGAGACATGTTCTGTGCTTCATCCTGACGAAGACATGCCACTTCACTATCCACTTCAGTGTATGCTAACAACAATTCCTGGAGTTCTGGACATTTTCAACCAACGCCTAGAGTCCTGGAGGGGCCAAAAACTGCAGATTTTCCGTTTTCCTGGCCATTTATCAGCTATTTTACCTATGAATACCCCAGTAATTAGACTTGCGTTTAGGGAATTTGGCAGatgagccttattttaaagtggaatcTTATCCCATGTCTTCTTGcaaattagtattttttatgtttcccTTCACAAGGCTTTATATGATATTTGATTAAATTGGATAAACCAGTCCAGAATGACTTGGCGTCCATTTCTTTAGAACACGCCAGGAAAGTTCGTACTATAGCAGGAACAGCACTAAAcacactgcagtgtgtgtgtggccctCCAGGACCCGAGCCGGACATCTTTTCTCGAATGTGCTGAAATAAAAGAGTCATCCATGGGAATTACTAGAATTACTGAGAGCTTGGACCTATCCGGACGCTGTGAGTCAGAGTTATAGAGTATTTTTATGGAACTATGCATCAAATCTCAGTGGGTTGTGAACTGTGAAACCTCCACTGCGAAGCTGGCGACATGACGGAGCTCAGCTCAGTTTTgccatatttaaaaaagaaaaaaaaggaactaCGCTGCTTGGAAAagtttgcaattttttttaaagaaacgataaaaagacaaaaagaagtattttttgaaaagttatttatttaagaatatgGAATGATGTACACAGATCTAGCGTagctattttaaataatactcaCTGAGATTTCTCCTCAACTTCTGTATGGTGTACATTTACTTTACGGTGCCTGATGGGGTtggattttgtattttataacattataactgTCTTCTACTAAACATctattttatttggtttatgaTTTTGGTATCAGTGTGCCTCCCTgtgttacagatttattttttattttttttcccattttccccaaaattttctggccaattgtcccacctatt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K07809 HS3ST3; [heparan sulfate]-glucosamine 3-sulfotransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50826 lncRNA downstream 154889 18869128 ~ 18907968 (-) True G37677
TU50832 lncRNA downstream 170942 18890061 ~ 18891915 (-) True G37682
TU50825 lncRNA downstream 196738 18865910 ~ 18866119 (-) True G37676
TU50816 lncRNA downstream 197300 18864176 ~ 18865557 (-) True G37668
TU50820 lncRNA downstream 200346 18860039 ~ 18862511 (-) True G37671
TU50864 lncRNA upstream 13730 19138466 ~ 19138693 (-) True G37711
TU50865 lncRNA upstream 17483 19142219 ~ 19142521 (-) True G37712
TU50952 lncRNA upstream 136743 19261479 ~ 19380932 (-) True G37775
TU50953 lncRNA upstream 138240 19262976 ~ 19265179 (-) True G37776
TU50945 lncRNA upstream 150415 19275151 ~ 19277669 (-) True G37771
XM_007248735.3 mRNA downstream 550772 18503640 ~ 18512085 (-) True LOC103034677
XM_022669267.1 mRNA downstream 564501 18452946 ~ 18498356 (-) False LOC103047794
XM_022669294.1 mRNA upstream 155250 19279986 ~ 19291010 (-) True LOC103043551
XM_022669298.1 mRNA upstream 205931 19330667 ~ 19340948 (-) True LOC111192386
XM_022669301.1 mRNA upstream 217293 19342029 ~ 19353789 (-) False lrrc45
XM_022669300.1 mRNA upstream 217293 19342029 ~ 19353789 (-) False lrrc45
XM_022669299.1 mRNA upstream 217293 19342029 ~ 19353789 (-) True lrrc45
TU50715 other downstream 427759 18633578 ~ 18635098 (-) True G37616
TU50696 other downstream 489681 18572691 ~ 18573176 (-) True G37603
XR_002649891.1 other downstream 744900 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 1266871 17789951 ~ 17795986 (-) True vps25
XR_002649888.1 other downstream 1357834 17692497 ~ 17705023 (-) False cntd1
TU51149 other upstream 693532 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 2748584 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 4340483 23465219 ~ 23510619 (-) False LOC111192393
TU52261 other upstream 4558390 23683126 ~ 23692337 (-) True fam13c
TU52289 other upstream 4710344 23835080 ~ 23960895 (-) False G38791

Expression Profile