RNA id: TU50816


Basic Information

Item Value
RNA id TU50816
length 1340
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G37668
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18864176 ~ 18865557 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttcacatttaaataactgaGTCAAACATAAAAATGAGATTCATAGTCTGGAGAATTCCAGTCTCCCCAAAAGGTAAGATTTAGATGGTGAAAAAAGGAGTGAGTTTCTACAGGAGAAGAAGATGAAGGTCTCAGGAAGTGGAGAGGTACGTAGCTATGAGCATCAAAGACAGTCATGCACGTCAAAAGGCGGATGCTTCTCAGGTGAGTTACGACACCTTCCCCCGTCCCCGATTCATTCGCATTCGGACAAAACAGCGTCAAACCTTCATGTAAAGCCTCTGTCGGGTGTAACAGTAATGTGCGGTATTTAAAGTGCCACGTACTGTCCAATAAAAGCCctcgtgttttttttcctgtcacAGCAATCCCGAATTTTACTAGTGTGTGAACACCTTTAGTTTTCAGTATTGTTTTTAACCCaccatatatatgtatataggcTCCACCCCCTTCACCTGGCGTCACAGTGGTGCAACAGTTTAAAGATTAAGACCCACTTTAAGACCCGCTATAGAAAAGCTTAACTGGCCCAGTTTGAAGTGCACAGTAAAAGATGTACAGCTATTTTGGAGaatttttggtgtatttattttcttggaAGAATGACGTAGACGGAGACACAGCAAGCCACAGGCCACGGGTTTGAGTCCCAAATTACAGCAGAGTATATTGATTATGTAACAGTGCTCCTACATCACGAGCGCTATTTACTGAAGCAGCTGTACCTTAGTAGTGTTTACTGAACGCAAGTGAAGTGCATTAGTTTAATAGTAACTGTAATTCATTATACCAGCGTAACATTAGATGTGGTAAGTATGTAGAGTATGTTAAACAATTCCAGATTACAGTACCTCTACATTCAAGTCAAGtaaataatttttacttttttattttaaccccTCTTGGCACTTAGCTACGTTTAACTACTgtagaatacaaaataatacagaccgGTGCATTCCTGGATTCCTTCCAGTTTCTACAGTTCAGACATGTTGATACTgccctttatttaaatgtgtgtcaTTTAAATCATCACCCTATAACCTGCATCAGACCCAAAGcaggatttattttattttttaaagcagattTAGGTTAAATGTGCTGTTCAGACGACAGGAAGCTCAGGAAAGGAAATGAaaagtgtgtgagaatgtgtaatttgtgtgaatgtgtgtttgtgggagGGGTCCGCAGGTGGTGGGGTCCGTTCAGTCCAATCAGGGATCGTTTCTCTGAGTCACGTGATCACATAGACATGTGCTCAGGCAGCACGTAGGAGATATCGTCCCACGGGTGGCGGTAGAGGCCTTGCTTCAGCCGCTTCTGGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50820 lncRNA downstream 1665 18860039 ~ 18862511 (-) True G37671
TU50818 lncRNA downstream 17514 18837768 ~ 18846662 (-) True G37669
TU50815 lncRNA downstream 39989 18814821 ~ 18824187 (-) True G37667
TU50778 lncRNA downstream 89833 18709453 ~ 18774343 (-) True G37645
TU50776 lncRNA downstream 150732 18711611 ~ 18713444 (-) True G37643
TU50825 lncRNA upstream 353 18865910 ~ 18866119 (-) True G37676
TU50826 lncRNA upstream 3571 18869128 ~ 18907968 (-) True G37677
TU50832 lncRNA upstream 24504 18890061 ~ 18891915 (-) True G37682
TU50864 lncRNA upstream 272909 19138466 ~ 19138693 (-) True G37711
TU50865 lncRNA upstream 276662 19142219 ~ 19142521 (-) True G37712
XM_007248735.3 mRNA downstream 352091 18503640 ~ 18512085 (-) True LOC103034677
XM_022669263.1 mRNA downstream 365820 18456646 ~ 18498356 (-) False LOC103047794
XM_022669262.1 mRNA downstream 374508 18452946 ~ 18489668 (-) False LOC103047794
XM_022669290.1 mRNA upstream 197300 19062857 ~ 19124736 (-) True LOC107197613
XM_022669294.1 mRNA upstream 414429 19279986 ~ 19291010 (-) True LOC103043551
XM_022669298.1 mRNA upstream 465110 19330667 ~ 19340948 (-) True LOC111192386
XM_022669301.1 mRNA upstream 476472 19342029 ~ 19353789 (-) False lrrc45
XM_022669300.1 mRNA upstream 476472 19342029 ~ 19353789 (-) False lrrc45
TU50715 other downstream 229078 18633578 ~ 18635098 (-) True G37616
TU50696 other downstream 291000 18572691 ~ 18573176 (-) True G37603
XR_002649891.1 other downstream 546219 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 1068190 17789951 ~ 17795986 (-) True vps25
XR_002649886.1 other downstream 1159153 17692498 ~ 17705023 (-) True cntd1
TU51149 other upstream 952711 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 3007763 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 4599662 23465219 ~ 23510619 (-) False LOC111192393
TU52261 other upstream 4817569 23683126 ~ 23692337 (-) True fam13c
TU52289 other upstream 4969523 23835080 ~ 23960895 (-) False G38791

Expression Profile