LOC103034677


Basic Information

Item Value
gene id LOC103034677
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18503640 ~ 18512085 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248735.3
GGTTTGGACTGGACCCTAACTGTGTGCTTCAACTTTCTATCCCCATTCTTTGCCCATTCTCCTCTAGAAGTCAAACATCAATGGCAACAGACAAGGCAGACCCAACGCCACCAGAGACAGAAGCATCTCTAAAGCCGGAGACCAGCCCACCACCCACATCACCCAGTCCTGCACCAGCCAAACCACCAGCCAGCAAAGCTCCAGCACCTCCAAAACCAGAGCTCAAGCTGGATTCTGCACTGATGGCGGAGTTCAGCAACGAACAGATCGAAGACTTTAAAGAGGCGTTCCTGCTGTTCACTAGAACCGCTTCAGGGCAGATCTCTTACGGTCAGTGCGGGGATGTGATGAGGGCCCTGGGTCAGAACCCAACCAATGCAGAGGTTCTGAACGTGCTGGGCAAGCCAAAGCCTGAAGAAATGGAGTCCAAGATGATTGATTTTGGGACGTTCATGAACATGTTTCAGCAAATCTCAAAGACCCCGGATAAAGGCTCGTATGAAGACTTTGTGGAGGGGCTGCGTGTGTTTGATAAGGAAGGGGACGGAACAGTGATGGGTGCTGAACTTCGCCATGTTCTCGCTACTCTAGGTGAGAGATTAACTGTTGGAGAGGTGGAGCAGGTCATGGCAGGGCAGGAAGACACAAATGGCTGCATCAATTATGAAGACTTTGTTAAACACATCATGACAGGATGAAGGAGTCGTTCAGATTCCTGACATCGCTCCGCCCAGTAGCTGCCTGAGAAAGAGATCAAGCGTGACTGTCATCCAGCTACAAATCTAATCAGTTCTGGATGATCAGCAGATGCTCTAGATGTCTCGGCTCTAATTGAGTTGTTAGATGTCCTCAGTTTGAATGTAGAACAACAAATAAAATGGattttgtttttcactgga

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248735.3 True 899 mRNA 0.49 7 18503640 18512085

Neighbor

gene id symbol gene type direction distance location
LOC103047794 mapt,LOC108274153,LOC108441162 coding downstream 5284 18452946 ~ 18498356 (-)
LOC111192385 NA coding downstream 26519 18474987 ~ 18477121 (-)
LOC103033508 si:ch211-255p10.4,brsk1,LOC108441159,LOC107598587,LOC108247084,LOC103033508,LOC107557374,LOC108274928,LOC107654020,LOC107658484 coding downstream 93722 18388678 ~ 18409918 (-)
LOC103033182 LOC108441158,LOC108273897,LOC107664611,LOC107708947 coding downstream 119235 18360572 ~ 18384405 (-)
LOC103032028 NA coding downstream 144780 18348497 ~ 18358860 (-)
LOC107197613 LOC108429207,LOC108429768 coding upstream 550772 19062857 ~ 19124736 (-)
LOC103043551 LOC108444285,LOC108273949 coding upstream 767901 19279986 ~ 19291010 (-)
LOC111192386 rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298 coding upstream 818582 19330667 ~ 19340948 (-)
lrrc45 lrrc45 coding upstream 829944 19342029 ~ 19353789 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding upstream 910815 19422900 ~ 19436284 (-)
G37565 NA non-coding downstream 54443 18410521 ~ 18449197 (-)
LOC103033820 NA non-coding downstream 85346 18411347 ~ 18418294 (-)
G37459 NA non-coding downstream 314196 18188473 ~ 18189444 (-)
G37458 NA non-coding downstream 315632 18187049 ~ 18188008 (-)
G37457 NA non-coding downstream 316729 18186368 ~ 18186911 (-)
LOC103035005 NA non-coding upstream 20531 18532616 ~ 18534771 (-)
G37596 LOC108435052 non-coding upstream 35540 18547625 ~ 18547908 (-)
G37597 scn4a non-coding upstream 35998 18548083 ~ 18550231 (-)
G37598 scn4a,LOC108435052 non-coding upstream 42264 18554349 ~ 18554604 (-)
G37600 scn4aa,scn4a,LOC107598592,LOC107732174 non-coding upstream 51026 18563111 ~ 18563493 (-)
LOC103047479 LOC108441156 other downstream 185683 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 707652 17789951 ~ 17795988 (-)
cntd1 NA other downstream 798617 17692497 ~ 17705023 (-)
LOC103025753 LOC108425979,LOC108274047 other downstream 814256 17534703 ~ 17689384 (-)
LOC103025140 NA other downstream 1026762 17473910 ~ 17476878 (-)
G37603 NA other upstream 60606 18572691 ~ 18573176 (-)
G37616 NA other upstream 121493 18633578 ~ 18635098 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 1032140 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 1306183 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 1999586 20511671 ~ 20679431 (-)

Expression


Co-expression Network