LOC103033820


Basic Information

Item Value
gene id LOC103033820
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18411347 ~ 18418294 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50654
CCCTGCAAGACTTTTCCCGGAGCACTTTCTGTCTTTCAGCACACACATAcgaacacacactctcaacatGCCAGAGTCCGCAGACGTTCCTGCCCAGTGCCAGGTTCTCAAAGAGGGAGTGGACAAATGTGTCCAGGGGAAGGGGGCAGAAGGCTGTAAGGAACTGATGGAAGCTTTTGAGGCCTGTGTGAAAAGTGCTGCCAAAGCCTCCTGAAAAACATACTGAAATGTCCTCCTTCTCTCGGGTCCTCCAGTATCCCTGCATTCCTGACTGCACTGTGCGCCGGAGTGAACCACGGTGACAACTGGACAGGGGTGTCGGTGCTGCAACATCCATGGATTTGCCTCTTCTGGAAAGGAGATGTGTTGATGACATCACTGATAAAATCCATGTAATTTGATACTTTACCTTAAAAACAGCTATTTACATCCAGCATGTCAGGAAAAAAACATAgtctatttatataaaaaaacactgtgcagtaaacatttttcaataaaaaaataatttaattatt
>XR_002649892.1
TGTCCTATTTTTTCCCCCTGCAAGACTTTTCCCGGAGCACTTTCTGTCTTTCAGCACACACATAcgaacacacactctcaacatGCCAGAGTCCGCAGACGTTCCTGCCCAGTGCCAGGTTCTCAAAGAGGGAGTGGACAAATGTGTCCAGGGGAAGGGGGCAGAAGGCTGTAAGGAACTGATGGAAGCTTTTGAGGCCTGTGTGAAAAGTGCTGCCAAAGCCTCCTGAAAAACATACTGAAATGTCCTCCTTCTCTCGGGTCCTCCAGTATCCCTGCATTCCTGACTGCACTGTGCGCCGGAGTGAACCACGGTGACAACTGGACAGGGGTGTCGGTGCTGCAACATCCATGGATTTGCCTCTTCTGGAAAGGAGATGTGTTGATGACATCACTGATAAAATCCATGTAATTTGATACTTTACCTTAAAAACAGCTATTTACATCCAGCATGTCAGGAAAAAAACATAgtctatttatataaaaaaacactgtgcagtaaacatttttcaataaaaaaataatttaattatttt

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU50654 False 518 lncRNA 0.45 3 18411349 18418279
XR_002649892.1 True 535 lncRNA 0.44 3 18411347 18418294

Neighbor

gene id symbol gene type direction distance location
LOC103033508 si:ch211-255p10.4,brsk1,LOC108441159,LOC107598587,LOC108247084,LOC103033508,LOC107557374,LOC108274928,LOC107654020,LOC107658484 coding downstream 1429 18388678 ~ 18409918 (-)
LOC103033182 LOC108441158,LOC108273897,LOC107664611,LOC107708947 coding downstream 26942 18360572 ~ 18384405 (-)
LOC103032028 NA coding downstream 52487 18348497 ~ 18358860 (-)
LOC103031500 LOC108441168 coding downstream 132646 18270382 ~ 18278701 (-)
LOC103031189 NA coding downstream 157513 18242919 ~ 18253834 (-)
LOC103047794 mapt,LOC108274153,LOC108441162 coding upstream 34652 18452946 ~ 18498356 (-)
LOC111192385 NA coding upstream 56693 18474987 ~ 18477121 (-)
LOC103034677 NA coding upstream 85346 18503640 ~ 18512085 (-)
LOC107197613 LOC108429207,LOC108429768 coding upstream 644563 19062857 ~ 19124736 (-)
LOC103043551 LOC108444285,LOC108273949 coding upstream 861692 19279986 ~ 19291010 (-)
G37459 NA non-coding downstream 221903 18188473 ~ 18189444 (-)
G37458 NA non-coding downstream 223339 18187049 ~ 18188008 (-)
G37457 NA non-coding downstream 224436 18186368 ~ 18186911 (-)
G37456 NA non-coding downstream 225057 18185594 ~ 18186290 (-)
G37455 NA non-coding downstream 239993 18171142 ~ 18171354 (-)
LOC103035005 NA non-coding upstream 114322 18532616 ~ 18534771 (-)
G37596 LOC108435052 non-coding upstream 129331 18547625 ~ 18547908 (-)
G37597 scn4a non-coding upstream 129789 18548083 ~ 18550231 (-)
G37598 scn4a,LOC108435052 non-coding upstream 136055 18554349 ~ 18554604 (-)
G37600 scn4aa,scn4a,LOC107598592,LOC107732174 non-coding upstream 144817 18563111 ~ 18563493 (-)
LOC103047479 LOC108441156 other downstream 93390 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 615359 17789951 ~ 17795988 (-)
cntd1 NA other downstream 706324 17692497 ~ 17705023 (-)
LOC103025753 LOC108425979,LOC108274047 other downstream 721963 17534703 ~ 17689384 (-)
LOC103025140 NA other downstream 934469 17473910 ~ 17476878 (-)
G37603 NA other upstream 154397 18572691 ~ 18573176 (-)
G37616 NA other upstream 215284 18633578 ~ 18635098 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 1125931 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 1399974 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 2093377 20511671 ~ 20679431 (-)

Expression


Co-expression Network