Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022663028.1 |
| length | 1125 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 4 |
| gene id | churc1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035899.1 |
| NCBI id | CM008302.1 |
| chromosome length | 74127438 |
| location | 55561570 ~ 55564747 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0090243 | fibroblast growth factor receptor signaling pathway involved in somitogenesis | biological_process |
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0040037 | negative regulation of fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0030336 | negative regulation of cell migration | biological_process |
| GO:0042661 | regulation of mesodermal cell fate specification | biological_process |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_002648717.1 | lncRNA | downstream | 60089 | 55499908 ~ 55501481 (-) | False | LOC111189318 |
| TU38104 | lncRNA | downstream | 119494 | 55432081 ~ 55442076 (-) | True | mixl1 |
| TU38122 | lncRNA | downstream | 135921 | 55424296 ~ 55425649 (-) | True | G28395 |
| TU38119 | lncRNA | downstream | 137827 | 55418687 ~ 55423743 (-) | True | G28394 |
| TU38113 | lncRNA | downstream | 156566 | 55401736 ~ 55405004 (-) | True | G28390 |
| TU38259 | lncRNA | upstream | 69797 | 55634544 ~ 55637030 (-) | False | gtf2h5 |
| TU38276 | lncRNA | upstream | 70778 | 55635525 ~ 55636660 (-) | True | G28505 |
| TU38359 | lncRNA | upstream | 321576 | 55886323 ~ 55890103 (-) | True | G28568 |
| TU38358 | lncRNA | upstream | 329762 | 55894509 ~ 55894839 (-) | True | G28567 |
| TU38404 | lncRNA | upstream | 561410 | 56126157 ~ 56126524 (-) | True | G28604 |
| XM_022662997.1 | mRNA | downstream | 32903 | 55512759 ~ 55528667 (-) | True | LOC103035409 |
| XM_007253909.3 | mRNA | downstream | 67062 | 55486612 ~ 55494508 (-) | True | laptm4a |
| XM_007253911.3 | mRNA | downstream | 95850 | 55462034 ~ 55465720 (-) | True | ttc32 |
| XM_007253912.3 | mRNA | downstream | 100715 | 55448126 ~ 55460855 (-) | True | LOC103021751 |
| XM_007253913.3 | mRNA | downstream | 116901 | 55441652 ~ 55444669 (-) | False | mixl1 |
| XM_007253906.3 | mRNA | upstream | 10991 | 55575738 ~ 55598081 (-) | True | capn3 |
| XM_007253902.3 | mRNA | upstream | 54799 | 55619546 ~ 55632642 (-) | True | LOC103045157 |
| XM_022663079.1 | mRNA | upstream | 69785 | 55634532 ~ 55641375 (-) | True | gtf2h5 |
| XM_022663084.1 | mRNA | upstream | 69785 | 55634532 ~ 55640113 (-) | False | gtf2h5 |
| XM_022663083.1 | mRNA | upstream | 69785 | 55634532 ~ 55638548 (-) | False | gtf2h5 |
| TU38133 | other | downstream | 59810 | 55499900 ~ 55501760 (-) | True | LOC111189318 |
| TU38134 | other | downstream | 59810 | 55499900 ~ 55501760 (-) | False | LOC111189318 |
| trnal-cag_7 | other | downstream | 717426 | 54844062 ~ 54844144 (-) | True | trnal-cag_7 |
| TU37835 | other | downstream | 937771 | 54556946 ~ 54623799 (-) | False | LOC111188920 |
| XR_002648645.1 | other | downstream | 1505873 | 54050761 ~ 54055697 (-) | False | LOC103040805 |
| TU38270 | other | upstream | 38123 | 55602870 ~ 55606886 (-) | True | G28501 |
| TU38271 | other | upstream | 38123 | 55602870 ~ 55606282 (-) | False | G28501 |
| TU38322 | other | upstream | 251125 | 55815872 ~ 55816598 (-) | True | G28536 |
| XR_452898.2 | other | upstream | 1081280 | 56646027 ~ 56694125 (-) | False | LOC103031416 |
| TU39086 | other | upstream | 2604574 | 58169321 ~ 58174704 (-) | False | LOC111189852 |
