RNA id: TU38271


Basic Information

Item Value
RNA id TU38271
length 649
RNA type TUCP
GC content 0.50
exon number 4
gene id G28501
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55602870 ~ 55606886 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTTTCATTCATAGTCTTGTGatttttctttgtcttcttcagaAACTGTTTCAGACTCCCTGAGGACATGTACTCTGTGATAAAAATAACCCTGGCTCTGTTCTCCTTCACATCAGCCCAGTACTTGTGAAACTTCACAATATTCAAATGCTCCAGCTGAATCAAGTTATCGAACACTGCTTTCACTTTTTCCTCCTGCAGTTTGAAATTTTTCCTTTCGGAGAACATGACCTCATTCCACACCACCTCCACTCCCTCCTCTGTGTCCATAGCCAGGTAGGCGTTGTCGATGCCAGGAACATTTCGCTGGTTAACCTCTTCTCTGCGTTTCTGCCAGCGTCCACATGGGCTCTCTTCCAGAATCTCAGACTCATCctcactctcctcctcctcgtcctcAGTGGCTGCAGTGGCGGCAGGGGGAGGCTGAGTTACTGTGGACACCGGGGGAGATACAGAGGAGACACCCTGGCCAGCAGGGACGGAGGCTACCGACTCAGGCTTCGCTTCCATGGTGGATGTTGGAGCAGTAGAAGTGAATTGTTTGCCTTCTCCTTCAGACATCACCGATGGATAACAGACTTTGCCCACAACCTCCGGCTACAAACGCAGTCTGGAATGCTCGCACCACAAGGGTGGGAGGCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002648717.1 lncRNA downstream 101389 55499908 ~ 55501481 (-) False LOC111189318
TU38104 lncRNA downstream 160794 55432081 ~ 55442076 (-) True mixl1
TU38122 lncRNA downstream 177221 55424296 ~ 55425649 (-) True G28395
TU38119 lncRNA downstream 179127 55418687 ~ 55423743 (-) True G28394
TU38113 lncRNA downstream 197866 55401736 ~ 55405004 (-) True G28390
TU38259 lncRNA upstream 28262 55634544 ~ 55637030 (-) False gtf2h5
TU38276 lncRNA upstream 29243 55635525 ~ 55636660 (-) True G28505
TU38359 lncRNA upstream 280041 55886323 ~ 55890103 (-) True G28568
TU38358 lncRNA upstream 288227 55894509 ~ 55894839 (-) True G28567
TU38404 lncRNA upstream 519875 56126157 ~ 56126524 (-) True G28604
XM_007253906.3 mRNA downstream 4789 55575738 ~ 55598081 (-) True capn3
XM_022663028.1 mRNA downstream 38123 55561570 ~ 55564747 (-) True churc1
XM_022662997.1 mRNA downstream 74203 55512759 ~ 55528667 (-) True LOC103035409
XM_007253909.3 mRNA downstream 108362 55486612 ~ 55494508 (-) True laptm4a
XM_007253911.3 mRNA downstream 137150 55462034 ~ 55465720 (-) True ttc32
XM_007253902.3 mRNA upstream 13264 55619546 ~ 55632642 (-) True LOC103045157
XM_022663079.1 mRNA upstream 28250 55634532 ~ 55641375 (-) True gtf2h5
XM_022663084.1 mRNA upstream 28250 55634532 ~ 55640113 (-) False gtf2h5
XM_022663083.1 mRNA upstream 28250 55634532 ~ 55638548 (-) False gtf2h5
XM_007253901.2 mRNA upstream 28250 55634532 ~ 55637057 (-) False gtf2h5
TU38133 other downstream 101110 55499900 ~ 55501760 (-) True LOC111189318
TU38134 other downstream 101110 55499900 ~ 55501760 (-) False LOC111189318
trnal-cag_7 other downstream 758726 54844062 ~ 54844144 (-) True trnal-cag_7
TU37835 other downstream 979071 54556946 ~ 54623799 (-) False LOC111188920
XR_002648645.1 other downstream 1547173 54050761 ~ 54055697 (-) False LOC103040805
TU38322 other upstream 209590 55815872 ~ 55816598 (-) True G28536
XR_452898.2 other upstream 1039745 56646027 ~ 56694125 (-) False LOC103031416
TU39086 other upstream 2563039 58169321 ~ 58174704 (-) False LOC111189852
TU39330 other upstream 3326681 58932963 ~ 58934789 (-) True G29317
TU39539 other upstream 3831318 59437600 ~ 59438298 (-) True G29478

Expression Profile