RNA id: TU83243


Basic Information

Item Value
RNA id TU83243
length 383
RNA type TUCP
GC content 0.49
exon number 4
gene id G61676
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3650845 ~ 3658268 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAATAAGGGCGTGGTTTAATCCCCCTCAGGCACACACCTGTAACCGAAAACGATTAAAGGACGCTGCTGGCGGCGTCCGTTTTAATCTACAGCTCAGATTACAAAATGGTACAACAAGCACACGAAGCAAGCGATGACATTTCCCCCCAGGCTGGACCTAGCGAGGTGGAAAATCACATGCTGTCTGACATCGGCATGAGTGTGAGATCTGCTCAGCAGATCGGCCGTCAGCTGGCTCAGATTGGCGATGAAATGAACAGCAGGTGGAGTGAAAAGCTTCGTAACCAGTGGCCACAACATCAGCACTGGCAGGGATATGGGAATGTGTTGAACTTTGCAGCTATGAATGGGCAAGTATCTTCTCTTCATCATCTCAGTGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83244 lncRNA downstream 419 3650845 ~ 3651547 (-) True G61676
TU83232 lncRNA downstream 9449 3562771 ~ 3642517 (-) True G61670
TU83233 lncRNA downstream 9449 3590228 ~ 3642517 (-) False G61670
TU83160 lncRNA downstream 136151 3512201 ~ 3515815 (-) False G61630
TU83158 lncRNA downstream 136800 3512201 ~ 3515166 (-) True G61630
TU83330 lncRNA upstream 129834 3788102 ~ 3854961 (-) True G61746
TU83339 lncRNA upstream 184406 3842674 ~ 3846010 (-) False cdpf1
TU83340 lncRNA upstream 188760 3847028 ~ 3851116 (-) True G61754
TU83350 lncRNA upstream 278416 3936684 ~ 3937790 (-) True G61760
TU83379 lncRNA upstream 351169 4009437 ~ 4009943 (-) True G61785
XM_022671233.1 mRNA downstream 103299 3529520 ~ 3548667 (-) False mdm1
XM_022671236.1 mRNA downstream 103299 3529520 ~ 3548667 (-) False mdm1
XM_022671235.1 mRNA downstream 103299 3529520 ~ 3548667 (-) False mdm1
XM_022671232.1 mRNA downstream 103299 3529520 ~ 3548667 (-) False mdm1
XM_022671234.1 mRNA downstream 103300 3529520 ~ 3548666 (-) False mdm1
XM_007232279.3 mRNA upstream 36919 3695187 ~ 3703230 (-) True rint1
XM_007232275.3 mRNA upstream 176064 3834332 ~ 3838502 (-) True LOC103030485
XM_007232276.3 mRNA upstream 182333 3840601 ~ 3846469 (-) True cdpf1
XM_007232293.3 mRNA upstream 197274 3855542 ~ 3865736 (-) True LOC103036484
XM_022671243.1 mRNA upstream 210470 3868738 ~ 3889640 (-) True LOC103036181
TU83189 other downstream 103264 3544185 ~ 3548702 (-) False mdm1
XR_002650183.1 other downstream 103295 3529527 ~ 3548671 (-) False mdm1
TU83187 other downstream 103544 3544185 ~ 3548422 (-) False mdm1
TU83086 other downstream 336727 3314153 ~ 3315239 (-) True G61587
XR_002650182.1 other downstream 1117619 2496078 ~ 2534347 (-) False LOC103031776
XR_455047.3 other upstream 676850 4335118 ~ 4382050 (-) True LOC103039416
XR_002650185.1 other upstream 684649 4342917 ~ 4382051 (-) False LOC103039416
TU83573 other upstream 963945 4622213 ~ 4622577 (-) True G61942
TU84110 other upstream 2716201 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 2974742 6633010 ~ 6695384 (-) False pphln1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053724 False 811 mRNA 0.42 6 NC_007115.7 18843105 ~ 18846611 (+)