RNA id: TU83922


Basic Information

Item Value
RNA id TU83922
length 1015
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G62217
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5759463 ~ 5761833 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGATGAGCACACACAAACCTAAAGTACCAGAAAAATAATCTTAGAAAATAGTActacataaattaaaataagatcTAGATTACAAACCTTTGCTTCTAAAGTGAGGGCCTAATGTACCCCTAGAAAGTTGTGTAGCCCGACATAAAAGGCTGGGTGGGTCTGTTTGGGTACTGGTATGAATGATGGGTGTCACCAATGTCTGTGATGTGCTCTGGAAGACACACAAAACACTAAGTAAACAGCAAGTAATCAAGCGAAAcattaatgtaaacaaaaaacaatcataataaaataagaCAGGCTAAATTACGCTATTATAAATACTCTATCTGCAAATGTTCTACTGATACGGGAAAATTTCCAAGGGAAAATTTCCCTTTGTTGCATAGCTTGGTGATGTTGATAgctagttacttacacaagatagctagcaTAACaagtgtaaaacataaataatttttacatttttttaatattatacgtatattatacatatttcatatttttttgtgaaatgggAAGCTACATATACTCATTAATTAGCTAATTTATCCACTGTTTACTTTCACTTGATTCTGTTCTTACACAGTCCCTAGTGATATCAAGTTAGCCATTTTAGCCAGGCTAAGATGATTTTGTTGTTAATATTATAAATCGTGGGGTAACGCTTAGTTTAGGACGGAGAATATGGGTTTAACACGCTAACATTAAGTCTCTGGATAGCAGCTAGCAGGCGAGTGTGGTCATAGATCTGAGTGCTAGCCTGCCTCATGGGTGCTCATTCCTGGTCTTGGGAGATTTCAGATGTAAAACAAGTCAATAATGGTAGCTAACCTGTCCTGGAGGGCCTTGATTACCCGGAGCAGGTGTGTGAGGTTAGAGCAGataaaccaTACAGGGTGGTAGATCTCCAGGAACAGAAATAAGCACCCCTGGCTTAGCTTGTGCCTACTTCATGTGTGCTAACGCTAACATGCGAACGtgaagaacataaacaaactatttagaaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83915 lncRNA downstream 27276 5731028 ~ 5732187 (-) True G62210
TU83808 lncRNA downstream 229267 5528696 ~ 5530196 (-) True G62150
TU83804 lncRNA downstream 232603 5525793 ~ 5526860 (-) True G62147
TU83780 lncRNA downstream 307206 5445563 ~ 5452257 (-) True G62127
TU83775 lncRNA downstream 309186 5443582 ~ 5450277 (-) True G62125
TU83948 lncRNA upstream 166659 5928492 ~ 5967717 (-) True G62237
TU83950 lncRNA upstream 174837 5936670 ~ 5967717 (-) False G62237
TU83949 lncRNA upstream 185101 5946934 ~ 5967717 (-) False G62237
TU83957 lncRNA upstream 186365 5948198 ~ 5950005 (-) True G62244
TU83988 lncRNA upstream 252171 6014004 ~ 6015703 (-) True G62272
XM_007229728.3 mRNA downstream 33180 5667055 ~ 5726283 (-) False abcc9
XM_007229731.3 mRNA downstream 33181 5664901 ~ 5726282 (-) False abcc9
XM_022671264.1 mRNA downstream 33182 5667055 ~ 5726281 (-) False abcc9
XM_007229726.3 mRNA downstream 33182 5667055 ~ 5726281 (-) False abcc9
XM_007229727.3 mRNA downstream 33183 5664901 ~ 5726280 (-) True abcc9
XM_007229722.3 mRNA upstream 334507 6096340 ~ 6119766 (-) True nuak1
XM_007229721.2 mRNA upstream 378129 6139962 ~ 6144208 (-) True LOC103029290
XM_022671275.1 mRNA upstream 871177 6633010 ~ 6695389 (-) True pphln1
XM_022671274.1 mRNA upstream 871177 6633010 ~ 6695384 (-) False pphln1
XM_022671273.1 mRNA upstream 871177 6633010 ~ 6695384 (-) False pphln1
TU83573 other downstream 1136886 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 1377412 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 1377413 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 2101195 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 2210761 3544185 ~ 3548702 (-) False mdm1
TU84110 other upstream 612636 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 871177 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 909777 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 960269 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 973330 6735163 ~ 6737948 (-) True G62484

Expression Profile