RNA id: TU83949


Basic Information

Item Value
RNA id TU83949
length 1564
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G62237
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5928492 ~ 5967717 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttaatacattttttcttcACTGCCTTTTAAAACATTGACCAGCTTTAAGCAAACCATAGTGGCACTTCTCACATACAGGCACATACGCAAAATGGCATATTGTACAAAAAACCTAGTCACTATTGCAGTCTCGAATACAGCCACAATCACCACAGCTCTGATTATTATTACTCATGTTTCATTAAGGCACTTCCTGATAGATAAATGGCAAAACCGAAGAATTCACAATATGCCGATGCGTTCTcgtaaaacagaaaagaaaatcatgaacaggaaggatggagagatttaAAGTCTGGAttcattaaaaaagaataataataataaaaatacacagcaTAGACATCTATTGATATGTGTAGTGCATGGAGCATCTGAGTCAGACCGTTGAATCATAAGTACCATCAATTAGCAAGATAAAACGCACTTAGTCGATAACAAGTCCTGTACTCGTCCTTTAGGACctaaaacatgataaacaattctttttttctcaaaaaaaagtttaaagggaaaataatgattaaacaCAGACAGTTCAGAACAGTACTAAACTTTGGTAAGCTCTAAAAtcaacataaaactccacagtGACAGTTCTAAGAattgcacagttttttttttttaacaagtgaAAGATTAGAAGGCCTTGTTCAGCTGAATTAAGtccttttatgtatttaatcaCTGACTTATTCTTTGTCCTTCCAAATTACAGCCAGTCATGCCTTGCAATCAGAGCTATTTGTAATCAACCGCTTTTCAAGAGGCTAGAAGAGCAGATGGTGAGAGAAATAGCAACATTCGAGCTTCGACACAATCAAAaggtcaaaatgtgtaaaatctcTTTGTCGATGTTTAGGATGACAAGGCGCTCCTCCTAGTTGAGCAGATCTTACGGCGGTTGTaacaaagaattaaaaaagttaaatgttccaaaaaaataaaacaaatgtacgCAAAGTCCTGTGTGCTGCAGTTCATGATTACAAAAAAGTAAAGGcgttaaaaacagctaaaacaaaaaaatgcttgCTAAAAATCGACACATCAGACTTTTAAATGGTGGACAAATGGACCTGGACTAATAACCtgtgatgatggatggatgtggAATGCAAAGAATATTCTTAAATAACGCAATATTGTGGCAGGTATGGAATGTTCTGGGAGTTTACTTTGGGTGACATGAACAGTATGAGACTTGTGGTACCTTTAACCAAAGCAGTGGAGAGATTCCTACCCTCTCCTGGCCAACAACTTTCCTCATATACATCTTCTCTTAACATAAACTAGCAGCGGCAAAAAGGATTGGACAAAGCATCTGGTCATGCGAAAATCACCAACACAGAACAGAAGGAAAATAAAAGCAACATCTTCTTTAAAGGCATGATTATGCATACAGTCGTACTGCATTTACACCCATAAGACACCCAAGGCAACATAAATTCCACATGAAGTGACCTCAAGAAGGAATGTGACCGACGTTGCTCCACAGTTATTTGCTGTAAAAAGATGCAGTGGTCGTCAACTAAACaataaaatttatatatatatttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83922 lncRNA downstream 185101 5759463 ~ 5761833 (-) True G62217
TU83915 lncRNA downstream 214747 5731028 ~ 5732187 (-) True G62210
TU83808 lncRNA downstream 416738 5528696 ~ 5530196 (-) True G62150
TU83804 lncRNA downstream 420074 5525793 ~ 5526860 (-) True G62147
TU83780 lncRNA downstream 494677 5445563 ~ 5452257 (-) True G62127
TU83988 lncRNA upstream 46287 6014004 ~ 6015703 (-) True G62272
TU83989 lncRNA upstream 46287 6014004 ~ 6015703 (-) False G62272
TU84032 lncRNA upstream 190540 6158257 ~ 6159938 (-) True G62307
TU84086 lncRNA upstream 367806 6335523 ~ 6335771 (-) True G62354
TU84093 lncRNA upstream 387086 6354803 ~ 6355105 (-) True G62361
XM_007229728.3 mRNA downstream 220651 5667055 ~ 5726283 (-) False abcc9
XM_007229731.3 mRNA downstream 220652 5664901 ~ 5726282 (-) False abcc9
XM_022671264.1 mRNA downstream 220653 5667055 ~ 5726281 (-) False abcc9
XM_007229726.3 mRNA downstream 220653 5667055 ~ 5726281 (-) False abcc9
XM_007229727.3 mRNA downstream 220654 5664901 ~ 5726280 (-) True abcc9
XM_007229722.3 mRNA upstream 128623 6096340 ~ 6119766 (-) True nuak1
XM_007229721.2 mRNA upstream 172245 6139962 ~ 6144208 (-) True LOC103029290
XM_022671275.1 mRNA upstream 665293 6633010 ~ 6695389 (-) True pphln1
XM_022671274.1 mRNA upstream 665293 6633010 ~ 6695384 (-) False pphln1
XM_022671273.1 mRNA upstream 665293 6633010 ~ 6695384 (-) False pphln1
TU83573 other downstream 1324357 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 1564883 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 1564884 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 2288666 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 2398232 3544185 ~ 3548702 (-) False mdm1
TU84110 other upstream 406752 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 665293 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 703893 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 754385 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 767446 6735163 ~ 6737948 (-) True G62484

Expression Profile