RNA id: TU1203


Basic Information

Item Value
RNA id TU1203
length 4880
RNA type TUCP
GC content 0.53
exon number 4
gene id LOC103032016
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2910754 ~ 2970340 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGTAAGTGCTGTTTAGACTGAAGTGTTTTTCCTAAGCGATGCTCACATCAAACCTGATGGGGGCGCTGCAGGCTGTACTGAAAAACCCACCAATCAACACAAAGAACCAGAATGTGAAGgatCGGGCCGAGGGTCTGGTATTGAAAGTGCTGACGGCCTTTAAGAGCAGTGATATTGAGAAGGCGGTTCAGTCTCTGGATAAGAACAAAGTGGACCTCCTGATGAAGTACATCTACAAAGGCTTTGAACGGCCCTCAGAGAACAGCAGCGCAGTCCTGCTGCAGTGGCACGAAAAGGCTCTCTCAGCAGGCGGCGTGGGCTCCATCGTCCGTGTGCTAACGGCCCGGAAAACCGTTTAAAACCCACTTCACCCAAAACACCTTGGCAGCGCTGACACAGGGATTGGCTGGCACAACCCCAGGCAGCGCCTGGCACCTACCTACACTGTGGAGGACGTCCGGTCTCACatctctcgctttctttcttctcttttattgCATTGCTTTCGTTCTGGGTTTTTCTCGCAGAGACGACAGACAGCTGCAGTTCAGATCTCTGTATCAGCTCGAGGGTCCGAACGCAGTGGTCTTCATCAGTGGACAGATGTCCCTCTTTAAAACCGACACAACCTGCTCCACCTCTTTCACTCTGCTTACCACTCAGTGGACTGTTGAGGTGGATTTAGACGCTTCTGttgatatgatgatgatgatgacgatcatgatttttattataatatagtattgTAGGCATGAGTatggacctttttttttttgtttttaaacagtgtcacAGTGTACAGGGACACATCGTGCACTTTTTACATCCCTAAAATTACTTATTTGATGCAGTTTATTGGCGGGTATTGGGTCACtttatagtgtttattaaaCCTGCAAGGCCACAGCACTTTACTGTTAGCTCAGTAGAGGTACCATTAAATGATACAGTGATGCAGCataatatatatagaatatatcaGTGTTTTCCAAGTTTTTCACACTTTCGTACCTCCCGCTTGATTTTAAAGATGTACTCACAGTAGGCAATACGTGCCCTGGCCTGCTTGAAGAGGTGGACCAGAGCATGGTTCACTTGTACTCGAGCTTGTACTCGAGCTTGAGCGCCAACAAGATGATGTCAGTGATGCGACTTTCCTGTAAACAATCATGGAGGTgatgtgccgaattcagcatccccaccagaaaaagcaccccctcttgggAGCGACGCCATTTCGCTATGTACGtaaccatgacttttggcacatacTTCTAAGTAAGTTAAAACAGATCATCTTTGCTTTTGCGctcctgagagagggtgcttttcatggtgggggtgctgaataTGGCACAATACCAGCAAGCCCACTGAGCAGCGAGTGACGATGTAAgtgtgctcgggcacggattgtttaaacgcagtgtaGGTGCATGCCAgcgggggagtggggagggggcagaACTGTGTCTActgtgagtacaccctaaaaCTTTGCTTAGTATGCCTTATATGCTGCCATAAAAAACAGCTTACTCTGCAAGCTCTCAAAAGGTGGttcctgtggtatctggcaccaGCATGGTAAAACATCTCCTTAATttgaggtaaaatgaggtaaACACCCTGTCTCCAGTTCAGGGTGTCTCTTCTTGGACCAGTATGAGTAGGTACTTTCTGGTTTGGCAGATTTCTGAAGGTGGTATCTGTGGTACCTCTGACCAAGACATTACAGGAGATAATGCAAGTCCTTGAGTTCTAATTTGAGAGGTGGCCATTTGTGCCTCACATATAACATTCCTGAAGGTGGTCTCTGGGACCAAGATATTACAGGAGGTCCATTAAGGACCTTAAAGACCACTATCAATAGGTACTTTACTGGTTTGGCCCTTATCAATTGACAGTTGCCTCACCATCTGGAACCAAGATACCACAGCAGATCCATTACTTTTATTTGAGAGGTTGAAACACTCACCAGTTCCGGTGTTCCTCATTGGACCACTATCTGGTAGATATCTATCCACATAAAgcttcttaaatatatattttagggcAGATTATGTTGACAGTTGACAGACCTTACATACGGCATGTTGGCACAAGGGAGGAGCTCAGTTCTGCAGTGTTGTGGCCCTGCAGGTTCCAATACCAGCttttatatctaaaaaaaaaaaaaaaacaatgaatagaAGCACATCTCTCATCTTGTTGATGTTCATACTGCATTCCAGATCTTAAATCACAGGCACTGCACTcgctgtgtgtgtagtgttttttttctgccttagCACCACCTTCTGTTGGACAGTGTGCATCTTCTGAACGCAGAGGAAGGATACCTCGTCTTCTGCCACactttctgtacttgctgtctTGGCTGGGCTTTGCTGATTTCTTCTtattcttcctcctcctccttttcttcAGGCCAAGGTTTTGCTCAACTGCTGCCAGAAAAAAAGCAGCTACCTGACTTTCTACTTACACTcaagtggccactttattagaaacacctaccctgtaGTTCCACACTGGCCAGTTTGAGTTTGACCAGTGATGCaccgaatatttggcaactataaataataatttataaataatttctaACAAACAATGGCTTTCTTCTTTgtattttaagtcatattgcATTATTATCTGTAAGATTTCCTTCAGCAGGAGGCACTGGATACTGGATTCTGAGACACAACGCTACACTTAAAGCTAGGCTCCCTATAGTCACAGGGCTGTGTGAAACTAAGCTCACACAACAACTACAGTTTGTCATCAACAcagcgagtaatccagctcagaaaaaaaaaaaaacagttagcgTCACTCTCTAGCTCAGGAGAGTTTAGTTGTTGTGTCTGTTTGCAACAATTAGCAACAGTTCCAGCAGTGGGCCCCCACAgtgaaatatatgtatatagtagAAATGCTGTATTATGTTTTGCCGAGTCGACAAGCTGTCCAccgcactatgtaactttggtaaaGCAAGCGGCAGGACAAAGCTTGTGAATGTGGATTATTATTGCACCACATTCTTTTAATTCAGATGtcagttctgtatctctcagcttgtccagaaatgcacgtgtaaagcatgtccttcTGTTTGCTAAAATGTTcaaattgattatttttaaattgtagaaCTACGTTTCAGTTTTGGCTCTGTGGTCAAAAACTGTGTTACAGACAGACTTAAAGAAAAAGATCATTAAATGTTAATGAGTCTCTATCTGAGGAGACTCTATGCAATGTGGAGCTACAAGAGAggatttccaataaagtggccagtgagtgtctGGTACATGCTTTTATAGGACTAATCGCAAGTTCTTCAAgacagaaaaaagggaaagcattccttgtgtttgtttgctgccaaaaagtttgattctAATCTAAAGGAACtcaattttgtactttttttttttgttgttgttgttgtaatgATCTAGCATCTTTACAGTCACACAAAAACCTGCTATCTCCATCTTGCTGTCTTTCCTTGTTTGttgacttaaaggagaactccgatTGACTAGGGAAGTAAAACACGATAAATAGtattaacctttgttgaatagcacacctccattctcccgcagctttcccgagatccagtaattttgttctgtttgtccaaacatgctttagaatgaatgacatggggcatattttgcgcctgcagataaatcactttttccaccattatccaggctcagagtagctccacacctcattgctAGAATCCgtagagccctgacatttaaaaactttaaaagtgcacaagaagcttattaaaatccACTGTTTACATACCGTAGCGTGACCTAATGCCCGGGGCTGTAGCCAATGCgatgggttgtaaacagtgattttttaataagcttcttgtgcacttattaagttattaatgcctcattttaaatgtcagggctcttcagatactggatcttggaaagctgccGGCTATTCAAcaactctttatcatgttttactacaccaaaagtcaattttacaccggagttctcctttaatgcccAACATAAAACCAATTGtcacataatgttgctttaatgaTTAACATTTTTTGGAGATAGAAGGTTTTGTTGTGACTGTGATGATAAAACACTTCATCAGAATGAACCCAGGAATCAGGATGTTTGATCATCAGTTAAGGGCACTGAATATTTGTACTAAACGTTGATCACAAGCTCCTGTATACTGGATATCTTCATTAGGGATGTTCCGATCCGAGTCACTGAATGTAGAATATCATAGACACTGATCtttgtttgtataaataatacagacccagagaataaatattttgataaaacATGCTGGCtgttttactgaaataaaatccGTTCTAAGCTTACTAAAATTGCCCTTGATCGGATCGGGACATCCCTCATCTTCATCACTGATGAGGTCATTGTTCTGTAACAGGATTGGTATGTCCACTTGTTCACTTGTTTTGGATCCAGGTGATCATTACTGGGCCCTTTTTTTTGCATAGTAGATTTTAGACACCTACTGAAAGAGGTTTCTCACAGTCAGAGTGGGCCGAACATTCCTGACATGAGTATGTACTTCAGTCAGAGCTCAGCTCAGCCTCCCGCTGGTCCACTCTACAAGCCATACATGAAAAAACTAACTGCTTTGGGCAAAGCTGAGCGATCGTCAGTGTTTGAGAGGGTGTGGTAAATGGGTGCATATCACTCACTTGATCAAGTGCAAATATAACAAACAAGTTTACCAACTGCCTTATAAAATATTCCTTTTATAACGTGTGGTCCATTTGGaagcaataaaaatgtattatgattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1183 lncRNA downstream 76910 2832123 ~ 2833844 (-) True G881
TU1143 lncRNA downstream 130872 2779649 ~ 2779882 (-) True G854
TU1139 lncRNA downstream 162474 2748048 ~ 2748280 (-) True G850
TU1110 lncRNA downstream 260767 2616083 ~ 2649987 (-) True G825
TU1126 lncRNA downstream 261741 2645262 ~ 2649013 (-) True G838
TU1288 lncRNA upstream 27353 2995830 ~ 3000663 (-) True G952
TU1289 lncRNA upstream 27353 2995830 ~ 3000663 (-) False G952
TU1298 lncRNA upstream 80931 3049408 ~ 3049755 (-) True G958
TU1303 lncRNA upstream 92466 3060943 ~ 3061199 (-) True G963
TU1318 lncRNA upstream 124468 3092945 ~ 3149212 (-) True G977
XM_022672993.1 mRNA downstream 18398 2835312 ~ 2892356 (-) True fam129a
XM_022672769.1 mRNA downstream 192719 2700358 ~ 2718035 (-) True LOC103035527
XM_022672560.1 mRNA downstream 368413 2539816 ~ 2542341 (-) True LOC111193163
XM_007245073.3 mRNA downstream 476353 2423713 ~ 2434401 (-) False znf414
XM_022672317.1 mRNA downstream 488113 2405363 ~ 2422641 (-) True LOC103037050
XM_022673448.1 mRNA upstream 17856 2986333 ~ 3036834 (-) True LOC103034573
XM_007245058.3 mRNA upstream 131369 3099846 ~ 3114769 (-) True c1h1orf27
XM_022673759.1 mRNA upstream 195234 3163711 ~ 3179594 (-) False LOC111193343
XM_022673733.1 mRNA upstream 195234 3163711 ~ 3179594 (-) True LOC111193343
XM_022673821.1 mRNA upstream 220530 3189007 ~ 3217021 (-) True LOC103033918
TU1089 other downstream 356067 2550216 ~ 2554687 (-) False G807
XR_454399.3 other downstream 476353 2423713 ~ 2434401 (-) True znf414
TU795 other downstream 1037627 1864515 ~ 1873127 (-) True yipf1
XR_002648446.1 other downstream 2054594 855579 ~ 856160 (-) True LOC111197534
TU266 other downstream 2240039 652484 ~ 670715 (-) False LOC103037308
TU1713 other upstream 932406 3900883 ~ 3909663 (-) False wdfy1
TU1773 other upstream 1131288 4099765 ~ 4101566 (-) True G1308
TU1837 other upstream 1308866 4277343 ~ 4304762 (-) False LOC111193783
TU2412 other upstream 2742859 5711336 ~ 5712686 (-) False LOC103031123
TU2413 other upstream 2744265 5712742 ~ 5721108 (-) False LOC103031123

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030781 True 3433 mRNA 0.38 4 NC_007113.7 20967673 ~ 20975677 (+)
tiger barb (Puntius tetrazona) TU15832 True 2591 TUCP 0.39 3 NC_056700.1 9746594 ~ 9751212 (+)