RNA id: XM_007229247.3


Basic Information

Item Value
RNA id XM_007229247.3
length 1749
RNA type mRNA
GC content 0.39
exon number 8
gene id LOC103043417
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10486486 ~ 10499361 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACAAGTGAAACTATCTAACCCTCATAATATCACAACAACTCTGACTGACTCCAGATTACTGTCGAGTCACTATGGACGATCCACTGGAAGCTCCTGAGGAACTGGTTCAGTGTAGCCACTGTAATAAAGAGGTGGCCAAGGTGAACCTTCCTGTACATGAAGCTCATTGCCAGCGGTTCCTCTGCCTGTGTTCTGACTGTGATGAGTTGGTGCCTAAGGATCAGCTTGAAGAGCATCGGGTGGAACAACACACAGTGGTGAGATGTAAAATGTGTGATAAGAAGATGCAGAGGTACAAGCTGCCAAACCATGAGACAAATGAGTGCAGAGAGAGGCCTCAGGTCTGTGAGTTCTGTGAGCTGGATCTGCCTCTGAGCGCTCTGGAGGAGCACGTTATGACCTGTGGAAGTCGGACAGAACGCTGTCCAGACTGTAAGCAGTACGTCACCCTGAGAGACCAGAAAAAACATGCCCAGATCTGTCCCTCTGCGCTCTCTGAGGACGACAGCCACAGTGAGGAGGAATCCACTTATGGAGCTATGAAGCCTGCGCCAATTAATAATTTGCAGGATGATCAGAAGCTTAAGAATCCGTACTTCACGGCTGGTCCGAGTGATCTGGTGGCTGACTCTGGGTCTGACTCTgagaatgaagaaaataaagaacCTCCAGACTTCACTTTCTCATCTCACTACATGAGTAAGGGGGGTGGTGCTGCTGGATTTGGAGACTTGGACCAGATCCGTACCTGTCCCAACTGTCACCTGGCACTTCCACTACAGACACTGCAATGGCACGAGGAAAAATGCAAGATTTTTGAAAGCTTGAAACTGATCGACTGAGACAGAGAACACAATtattctttttaCAGTACAAACCCCTTTAACATCACTGGACAGTGACCTCATCATTAGTAATGGAGCTGGTTTGGGCAATTAATGCACTCCACACCAACCAATATCTGCACTCTGCAATTAACAGCAACTATCAAACGGAGAAGAAggaagaaagaggagaagaagtCTTTTCTATGGGTCTATTCATCATAAAAattttacacataaaaaaaacagctgtccGATTTACCATGTGTTAAAAATTAAGGCAACAAAATGTATACTCTAACTTTATATCtacttttttattagatttttatatGATTATTATGAATTAAATAGTAAACTAGTGATTATGtgaaagaaatttaaaaagtgcattttaaaaagtgcaataTACATTGGcataccaaaagtcatgggcCAGAAAGTAGTATCATGTCCCAAGAAGCTAAAGAATTCTGCACTGAtctgtgggatgtgtgtgtaagttatccagcattgaaaatgaatgttgtTTTTGCTAAAGCTCAACCTCACAAgttaacacctcacaacttgcaCAGGTGCGGGCTTTCCCAAGATGTCCCCTAAGGTAACacttaatcatgaatttacatattgctatcccatgacttttggaatgtataaaaaacaatgaaagtaaaaaaatgacacaaatgccaaatgtatatattatgtacttttaaatattaggtacttttttattattatcattgttATAACAAATTCTTAAATTATTGAATGTAATAGTAAGTTAGTATGAATTAAAAATGTCAATGAATGtcaaatatgttaaaatgaTGACTTTTTAACATGCAttacatgttttctttttaagtcACTTTTAAATGCAAAAGTTATCTAATAAATTGGAGAATAAAATGatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3493 lncRNA upstream 73472 10412524 ~ 10413014 (+) True G2665
TU3482 lncRNA upstream 193971 10291699 ~ 10292515 (+) True G2654
TU3470 lncRNA upstream 273069 10213182 ~ 10213417 (+) True G2644
TU3450 lncRNA upstream 330313 10133908 ~ 10156173 (+) True G2627
TU3398 lncRNA upstream 362748 10120630 ~ 10123738 (+) True G2577
TU3638 lncRNA downstream 81840 10581201 ~ 10581668 (+) True G2781
TU3686 lncRNA downstream 207817 10707178 ~ 10707408 (+) True G2821
TU3687 lncRNA downstream 208193 10707554 ~ 10707843 (+) True G2822
TU3694 lncRNA downstream 248540 10747901 ~ 10748525 (+) True G2828
TU3702 lncRNA downstream 284443 10783804 ~ 10784140 (+) True G2836
XM_015604137.2 mRNA upstream 246666 10226770 ~ 10239820 (+) True LOC103043114
XM_007229245.3 mRNA upstream 246666 10226770 ~ 10239820 (+) False LOC103043114
XM_007229244.2 mRNA upstream 294142 10174281 ~ 10192344 (+) True LOC103042389
XM_022682163.1 mRNA upstream 297767 10179850 ~ 10188719 (+) False LOC103042389
XM_022682063.1 mRNA upstream 480175 9991573 ~ 10006311 (+) False LOC103041662
NM_001320208.1 mRNA downstream 586094 11085455 ~ 11089687 (+) True LOC103042748
XM_007236576.3 mRNA downstream 592796 11092157 ~ 11116667 (+) True unc119
XM_022683375.1 mRNA downstream 758380 11257741 ~ 11258661 (+) True LOC111195540
XM_022671357.1 mRNA downstream 759085 11258446 ~ 11279177 (+) True LOC103029949
XM_015601042.2 mRNA downstream 797208 11296569 ~ 11303882 (+) True ankmy2
XR_001518524.2 other upstream 744021 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 816361 9631865 ~ 9670125 (+) True G2509
TU3170 other upstream 1529094 8944479 ~ 8957392 (+) True lyrm9
TU3168 other upstream 1539170 8944479 ~ 8947316 (+) False lyrm9
TU3112 other upstream 1751534 8732723 ~ 8734952 (+) True G2358
TU3788 other downstream 774637 11273998 ~ 11279159 (+) False LOC103029949
TU3793 other downstream 788770 11288131 ~ 11288846 (+) True G2910
TU4041 other downstream 1425089 11924450 ~ 11927250 (+) True G3096
TU4335 other downstream 2483264 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 4461812 14961173 ~ 14963583 (+) True G3736

Expression Profile