RNA id: XM_007245184.3


Basic Information

Item Value
RNA id XM_007245184.3
length 3460
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC103043916
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 864798 ~ 871979 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTCTCTTTCAGAAGCTTGTTCAGCTCGAGCGCAGCAGCTGCAGgatcagcaccagcagcagcaccgGCAGCAGCAGTGATGCCCGCGGGCACCACCAACCGCTCGGACTGCGCGCGCTGCACCGTCCCGGGGGCCCCGGggcaccaccagcagcagccacCCCCTCCACCGCTCGCGCTTTTCCCCGTGCCCGCGCTGGTGGCCGCTACGGTGGCGTGCGCCGTGCTGTTCGTGGCTGGAGTGGCGGGAAACCTGACGACCATCGTGGTGGTGAGTCGGTACCGGGACATGCGCACCACCACCAACCTTTACCTGCGCAGCATGGCTCTCTCCGACCTCCTGGTGTTCGCGTGCATGCCGCTGGACCTGCAGCGCGTGTGGCGCTACCGGCCGTGGCCGCTGGGCGGCGCAGTCTGCAAGCTGTTCCACTTCGTGAGCGAGAGCTGCACGCACTGCACGGCGCTCAGCATCGCGGCTCTGAGCGTGCACCGCTACCTGGCCGTGCGCTTCCCCCTGCACGCCAAGGTGGCCGTGACGCGCCGCCGCGTGCGCGCCGTCATCCTCGCGCTGTGGGCCGTGAGCGCCTGCAGCGCCGCGCCCGTGCTCGCGCTGGTGGGAGTGGAGGAGGGCGGCGGGCTCGAGCTCGGACACGAAAACGACACCGGCGACGAGAGCTGGAGCGCGAACTGGACCCTGAACGGCACcgggagctggagctggagcgcGAGCGAGTGCACGGCCACGCGGCGCGCGGTGGAGTCCGGGCTGCTCTCCGCTGTGGTGTGCGTCAGCGGTGCGCTCGTGGCGCTGCCCGCGCTCTGCCTGTGCGTGCTGTACACCCTGATCGGCCGGAAGCTGAGCCGGGGACGGCGCGCGGACGCGCGGAGCTCCGCGAGGGAAAAGAGCCACAGACAGAGCGTGAAGCTactggCCGTGGTGGTGTTGGCCTTCGTGCTGTGCTGGATCCCCTTCCACGTGGTCCGGTTTCTGATCTCCACCTCGTCGGCCGCCGGTTCTCCGATCATGTCTCTGATCAGTCAGTACTGCAGCCTCATCTCCTTCGTGCTGTTTTACCTCAGCGCTGCCATCAACCCCATCCTCTACAACATCATGTCCGAGAAGTACAGGGCCGCCGTGTGCCGCCTGTTCGGGATCCAGGGGCGCCAGCGCCGGGGAGCGTCCGTCACGAGGGCTGAGAGCTGCCCGGGACTCAACGAATCCACCGTCAGCCTGTGACTCCCAGAAACACGGACACCCTCATCATCCTCATTCAGGGACAGGGGGATGGATCTGTAGTTTGGGGGCATCAAAGTAGTTGGATAGCCAAAAGTACATGGACACCTGCTTGTTCATTGTCCTTTTCTGTGAAGACATTtcttacaattattattttggttacatttaaaaatctataaaactataaaaacttgtgttttaagaagaacaagtgcgattaatcaaAGCTAATCAATAAATATGGTTGtgattaatctatttttttttatcgattGACACTATTTTTTAATGAAGTCTTAAAGTCAAGAAAAACTATTTTCAATATCCttcatttcagaagaaacaatgaatgagtgagcaggtgtcccattacttttggccATATAGTCACAACAACAGTCTAACAGTAGAGGTACTGCTGTAGCGTTCCCATGTTCCTGATCTCATTCATTCCACTTCCTGTAGAATCCACAGAAACACAGCAAGCACAAATCCCTCCCTCCGCACTTCGGATCCACTGTGAACAGGATTAATCAGTGACTGGATTCAGACGCACATCGTCTTCTACTGTCttatcagatcagatcagacttTAAAATGCTTCATATGATGATCAGAACTCTGGGCAGAGGACCTTAAAGAGATCAAAGAGGAATCATCAACCATCAGACCATCAGGCGATCAGGGAggacggaggaggaggagcgctGCAGGTCATTAACAGCCTCGAGGCTGTCTTAAAGTCTGCGGCGAGGACGTGTTGAGGACGTGGTGAAAGAAATGCGGTAGAACGAGTCAGAGAACATCTGTTGCCTTAAATAACGTAAATATCTGGAGGACAAAACGAGCACTGTAGATACAGCAGCGTCCTCTCGCTCCTGATCCAGAGAAGCGAAGGCGCTGTGCTATGTTCATGCTAACACTAACTGTGCGCCTCAAATGTGACGTGTCATCTCCTGTCTTAGCCTGCAGGTGAACATGATTTCCTGTGGTAGGACACGTCTCTGGAATTAGTCTCTGAATTAGACATTTTCTAGGGTAACCTGTGACCACATTTAGTCCTGGTCATGCATTGATGTGAAAATCAGGGTTATCTTAGCCATGTCTGACTGAACACCACAAGCTGAGTTAGAGTTGCATCGCCCCCAGTTGCAGCTTATTATATAAGAATTGGCCAACACTCCAGTTGCTAAGCATAATATGACAACCGGCCTGAGACATTTTGCAAACACTGAAGTTGATAATAAGGGAATTGGCCCAAACTACCTTTGCCTACACCCCAGTTGCCCAGGAtgatatgggaattggcctgaGCTGTATGTGCTAACACCCTGGTTGCagagtaaaatatgtaaattggCCCAAGACACTTTTGTCAAATCACTggttgttgagtataatatggaaattggccCATGCCATTTATGTCAAcactccagttgctgagtataatatgggaattaaCCCAAGATGCCTTTGGCAACTCTCTGGTTGCCTAGTATAGTATTGGAATTTGCCAGAGATGCATTTGCCAACACCCCATTATATGGCaacactccggttgctgagCATAATATGTGAATTTGCACAAGACGcttttgccaacaccccagttgctgagacTAATATGGGAATTGACTTGAGTTGcttttgccaacaccccagttgctgagtataatatgggataaTAATTTGTCCAACCTGCTCTTCCCAACAGTCCAGTTGTCCAGTAtgatatgggaattggcctgaGACATTTTTGCAAATACTGCAGATGTTTGCTTTAACATGGGAATTGACATGTGTTGCTTTTACCAACTCTCTGGTTGCAGAGTATACCAGAACAATTGGTCTGAGCTACATATGCCAACACTTCAGTTGCCGATGATATGTGAATTGGCCCAAGCCGCTTTTCCCAACACCACGGATGGCCCAAGCTGCTCCCTTCGCCAACACCCAAGTTGCCCAGTATGATATGGCACTTGAAATGAGCTGCATATACTAATATGGGAATTGACCCGAGATGGTTAAGCCAACACCCAGGTAATTTTCCTGAGGCAGATTTGCCAATACTCCGATTGCTGAGTATATTATGTGAATTGTCTCAAGCAACTTTTGCCTACACCCTGGTTGCAGAGTATCATATCTGAATTGGCCCAAGATGCTTTTGCCAACACACCGGTTGCAGAGtctaatatgggaattggcccaagatGCTTTTGC

Function

GO:

id name namespace
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380 lncRNA downstream 9309 855070 ~ 855489 (-) True G303
TU378 lncRNA downstream 12854 845542 ~ 851944 (-) True G301
TU232 lncRNA downstream 286247 556165 ~ 578551 (-) True G178
TU229 lncRNA downstream 289758 556165 ~ 575040 (-) False G178
TU220 lncRNA downstream 402443 445455 ~ 462355 (-) True G170
TU395 lncRNA upstream 32633 904612 ~ 905544 (-) True G315
TU409 lncRNA upstream 77854 949833 ~ 950520 (-) True G328
TU413 lncRNA upstream 102472 974451 ~ 988694 (-) False LOC111191897
XR_002649749.1 lncRNA upstream 105912 977891 ~ 988511 (-) False LOC111191897
TU421 lncRNA upstream 110207 982186 ~ 1030058 (-) True G339
XM_022671205.1 mRNA downstream 150817 708344 ~ 713981 (-) True LOC103025162
XM_022671191.1 mRNA downstream 194124 589669 ~ 670674 (-) True LOC103037308
XM_022674666.1 mRNA downstream 339291 504270 ~ 525507 (-) False pxylp1
XM_007245116.3 mRNA upstream 266266 1138245 ~ 1146382 (-) True LOC103021504
XM_022669078.1 mRNA upstream 621187 1493166 ~ 1496427 (-) True LOC111192362
XM_022669424.1 mRNA upstream 835760 1707739 ~ 1717654 (-) True rabggtb
XM_007245109.3 mRNA upstream 847833 1719812 ~ 1729386 (-) True acadm
XM_022669681.1 mRNA upstream 892285 1764264 ~ 1772891 (-) True best4
XR_002648446.1 other downstream 8638 855579 ~ 856160 (-) True LOC111197534
TU266 other downstream 194083 652484 ~ 670715 (-) False LOC103037308
TU795 other upstream 992536 1864515 ~ 1873127 (-) True yipf1
XR_454399.3 other upstream 1551734 2423713 ~ 2434401 (-) True znf414
TU1089 other upstream 1678237 2550216 ~ 2554687 (-) False G807
TU1203 other upstream 2038775 2910754 ~ 2968477 (-) True LOC103032016
TU1713 other upstream 3028904 3900883 ~ 3909663 (-) False wdfy1

Expression Profile