G170


Basic Information

Item Value
gene id G170
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 445455 ~ 462355 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220
gtccttcttggtggtatgctgctgacattaccctggataccgtggttcttgatgcatcacaaagacttgctgtcttggtcacagatgttccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcccccataatgttatagtgtgcattgaaatattttgagcaatattattatatttgctcttaccctgctaattgaaccttcacactcttactgctcttactgctgcaatgtgcaattaatgaagattgaacaccaggatGCTCGAATTTAgcaatgaaacctcccacactaaaatgatgacaggtgtttcagtttcattgtccaacccctgtatatttgaaatgaaatgaaCAGTCCTAATCCAGGACTGGAGGACTGGGCCTAATCTGGGTCTGGGTCTGATTAAGGCAAATGGGTTTCTAAAATATAGAACAGACcgacaaacaaataaaatgatttacgAATTTATGTGTGGATCAGTTTTCCAAACACATAGTAAAGGAGCATTTCCATACACTACATcccaattacaattacaaattaggagaccattttaaaatgatcagtttctccgattttTAATACTGCCAACATTTCTTACAAATGTGGGTCGATTCTGGGCGGGTCACGgacagtttataaaaaaataaatacataaaaaaactcattgtactcatattttatactgtggaaaaaagagacaaagagagtttcttactaatgtactctgaatgcagagaagtgaaataCTTAATTTTGTGGCCTTCTCTATTTTGGGCAGTTTTGATACTTAATTTTACTGTActaacttttatacatgtagttgtcatATTCCTCCTCAATttcttaaaagaaaaactcttaaattcactttcgggtctctttttttgtgtgagttttttttggtcacgccacacgtctttacgtacttacgccacacgtacagcctctactAAACGCGagaggctggtggagcaatggagacttcagaaggggaaactcagatgCATCTGCTCATATTGTGATGAATGAGGGCCCTGGGGTGAAGAATGGAGGATAATCATGCATAGTTGTTCAGTCGTGCATGATACACTAAAACCAGGTCTAGTGTAATAATAACCAAAAGTCTTAATTCTTAACTGATTTGCACTGTTGACCTTCTTTTTTTAACCTTATTATGTGTTTGGAAAACCAGCCCTACTCAGTGAACagtaatggtggtgatggtcATGGTAATGTTGAGCATTTCTCAGAACATCTCACTGCAGTCTCACTGATGAACTGAGCCGAGCTTCTGGGAATCCATATTATTTATCGTTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220 True 1340 lncRNA 0.48 2 445455 462355

Neighbor

gene id symbol gene type direction distance location
LOC111195070 LOC108442280 coding downstream 141707 295258 ~ 303748 (-)
LOC103029691 LOC108443634 coding downstream 254071 185208 ~ 191384 (-)
pccb pccb,LOC107688488,LOC107722577,LOC107680238,LOC107709888 coding downstream 270628 167306 ~ 174827 (-)
LOC103028749 slc35g2a,LOC108414513,LOC107709891,LOC107586575,LOC107550608,LOC107680231 coding downstream 287849 152872 ~ 157606 (-)
hltf NA coding downstream 294291 130891 ~ 151164 (-)
pxylp1 pxylp1 coding upstream 41915 504270 ~ 525507 (-)
LOC103025162 NA coding upstream 245989 708344 ~ 713981 (-)
LOC103043916 NA coding upstream 402443 864798 ~ 871979 (-)
LOC103021504 LOC103021504,LOC108442331 coding upstream 675890 1138245 ~ 1146382 (-)
LOC111192362 NA coding upstream 1030811 1493166 ~ 1496427 (-)
G151 NA non-coding downstream 80408 343925 ~ 365047 (-)
G146 NA non-coding downstream 96539 288076 ~ 348916 (-)
G147 NA non-coding downstream 98219 289663 ~ 347236 (-)
G149 NA non-coding downstream 101858 341518 ~ 343597 (-)
G135 NA non-coding downstream 264009 179397 ~ 181446 (-)
G178 LOC108440468,LOC108278266 non-coding upstream 93810 556165 ~ 578551 (-)
G301 LOC108442328 non-coding upstream 383187 845542 ~ 851944 (-)
G303 NA non-coding upstream 392715 855070 ~ 855489 (-)
G315 NA non-coding upstream 442257 904612 ~ 905544 (-)
G328 NA non-coding upstream 487478 949833 ~ 950520 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other upstream 127314 589669 ~ 670715 (-)
LOC111197534 NA other upstream 393224 855579 ~ 856160 (-)
yipf1 yipf1 other upstream 1402160 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 1458125 1920480 ~ 1928255 (-)
znf414 NA other upstream 1961358 2423713 ~ 2434401 (-)

Expression


Co-expression Network