G135


Basic Information

Item Value
gene id G135
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 179397 ~ 181446 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU178
ACTGTGatgtgcagaaataaaaaaaatataaattttatttaaaaaatggatgaaaatagAAATTAAATGCTGAGGTTTCATACAAATGGTCAGAAAATTAACCTGATAAACTTTACACTGACCATTTAGGGGCAACATAAGCCTACAATCAAGAGCGAAACCATGAGCTGATCTTACTCAGTGTCTgctcacaacacacaaacaatacTGCTGCAGGACGACCAATCAGAGccaacacactgatacacacacatagcAAACCAGAATTCGACCCAAAAAAAGCCCCAAATAAACCCTTAGTGTCCAATAAACTGAAGATCTCCAAATAACAACCAATCCTGACCTCTAGTGATGGCAGAGTTTTACTGCTACTAAGATAGcaaagctgaaaaaaacaatactgatCCTATTGATAATATTGACACATACTGACCACTGAttgattatgtaaaaaaaaagggggacCCCAAATATACACAGTGAATGTGtacttttattgtaaatattaaatattatacaccCATAACTATCACCACTTGTATGTTATTTAACTCATTTTCATACTTTGTCACATTAAATTATAATGTCCTTTTGTTTTGCTAATAATCAAGAGGCCATGTGACCTGAAAACTTCTTGTCTTTGTCTTTTCATAAAGAttgtttttagatttaaataGAGATTGACCCAATTTCTGGGCATTAATGTgtttaccataaaaaaacatttaaaattaaaacaattttagaaacttttaccacaaaaaaaaacagctgaagaatgaaCATTCACACACTGGCCTACATTCAGCAGGAAGGTGAGGGGATTAGCTTATTAAGTGGAGAGGTACGATGCTGATGAGTGATATCACTAGGACTAGAATCTGTGTTAATAAATGTTCTCATATCAGGAGGACTTGAACTACTACATTCTGCTCTATTACGCTAATTGTTTAATACAGCCACCTTTAACCACTGACCCCATTCTTCTGCAGTGAAACTAAGTCTGACTCCACCGACCAACTAACAGTAAACATCCTGAACTGGCCTTCAAACAGGAAGTgcttaattataaaataaaacattaaaatcagatCCAGTTTAAGAGCTTTCCTTAAAATCACCAAAAATACACcatttactgcaaaaaaaacacagactgacccagaaaaaacactgaacaatgACAAAATTAACAGACCAGGGGCAGACTGACCAGACCAAAGACAAACTGACCAGACCAGGGACAGACTGACCAGACCAGGGACAGACTGAGCAAAAATACAGAAAGTAACAGTCTCTATACCAAGACCAAGTATCACAGGCTGTAAATCTGAGAGGTCAATCTAACTGAATCAGTTGATTAACAACGGCAGGCCCCTTGGAACCGGAGAACCCAATTCCTCAAAAACACCAGGAATGAACACCTAAAGGATCTGGCAAACACcacaattaaagtaaaatgccCCAAACCCAAAAAGCCAGTAATCCAGTCATTTTAGCCAGTAATCAATGAAAGCCGTCCTGCTTAGCTATAAAGTTAATGTAGCCAACAAGCATATCGTctctgtccaataaaaacaagtttatttcaggtaattttgaagtatttgTATGGGTCTGTTCATAACAAAAATTTGGCACAGTTTTaggaacagtttgtctgttcaaattatgtagtaaaaatagacatacttgtttttcattggaccaTTATAACTACAAGGCTAATTTAGTCAACAACCCACCAATTAACAGTAGAGCATTAGCCTCAATAATGTTTGAGATACTTTACACTTATAGCTGCAATGATTAATGGTGGAGTAAAAGCCTACCTGTTACCTGTTAACTATGCCATATTAGCCGTACAACATCAGTGCTAATAGTTTAGGTATGTGCCTTCATTAATTGCTATCTAAATTAGCTCAAGTGTAAACCTGAAGAAGCCCCACACTTATTTCATTAGATTTACAGTAACTGAAGGTAAACTGGATTTTCCAAACTATCGCTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178 True 2010 lncRNA 0.39 3 179397 181446

Neighbor

gene id symbol gene type direction distance location
pccb pccb,LOC107688488,LOC107722577,LOC107680238,LOC107709888 coding downstream 4570 167306 ~ 174827 (-)
LOC103028749 slc35g2a,LOC108414513,LOC107709891,LOC107586575,LOC107550608,LOC107680231 coding downstream 21791 152872 ~ 157606 (-)
hltf NA coding downstream 28233 130891 ~ 151164 (-)
bloc1s3 NA coding downstream 144187 32409 ~ 35210 (-)
LOC103023905 NA coding downstream 151715 18991 ~ 27682 (-)
LOC103029691 LOC108443634 coding upstream 3762 185208 ~ 191384 (-)
LOC111195070 LOC108442280 coding upstream 113812 295258 ~ 303748 (-)
LOC103031067 NA coding upstream 267132 448578 ~ 463834 (-)
pxylp1 pxylp1 coding upstream 322824 504270 ~ 525507 (-)
LOC103025162 NA coding upstream 526898 708344 ~ 713981 (-)
G130 NA non-coding downstream 14353 164655 ~ 165044 (-)
G125 NA non-coding downstream 52151 124561 ~ 127246 (-)
G146 NA non-coding upstream 106630 288076 ~ 348916 (-)
G147 NA non-coding upstream 108217 289663 ~ 347236 (-)
G149 NA non-coding upstream 160072 341518 ~ 343597 (-)
G151 NA non-coding upstream 162479 343925 ~ 365047 (-)
G170 NA non-coding upstream 264009 445455 ~ 462355 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other upstream 408223 589669 ~ 670715 (-)
LOC111197534 NA other upstream 674133 855579 ~ 856160 (-)
yipf1 yipf1 other upstream 1683069 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 1739034 1920480 ~ 1928255 (-)
znf414 NA other upstream 2242267 2423713 ~ 2434401 (-)

Expression


Co-expression Network