G301 (LOC108442328)


Basic Information

Item Value
gene id G301
gene name LOC108442328
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 845542 ~ 851944 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU378
aatgaattataataaataattcacatcaGTTACTGAGAAATTGGCCTTTAATAACAATGTAcaataattgtatatatatattaagttaGTTTAGCAAACCAACCAGTAATAAcatgctcatttgcataaaaaaaggcagaaaagcTATGTCTGCTGTGTCTCTCTGAGCCGCTGGCTATCTGGACTATAGTGTACTCTGTGCGGTGCTGGCCGGCTCTGTACcgttccactcactcactcacttcatgAATAAATATTCCACCATGAACGCGATGACGAAGGACAGTGCGCTGAACGCTCCCACCAGCAGGGCGGCGACGCGCTCGTCTGTGCCCGCGATGCCCACCGCTTTGCCCGTCTTGCTGGTGGGCGTGTCCTCGAGCGCCGGTAGCTCAGCCCTGCGGAGTGTGAAGGGTGTGGGGGGGCTCTGGGGTCCGCAAAGCTCCTGAGCGCTGTCCAAACACTTCCGACACACGAACACACGGAACCGGTAATCTGTGTTCCACTGCAGGCCTGAGATCTGAAAAACTGTGGCCTCACCCTTATacacCTGTTTGTATTCAGACTCTCTCCCAATTAACACCTGGAGAACGTAGCTGACTGGATCTCCTCTCATTGGAGGAATGCTTTCCCATGTGACCTCACACAGGCTTCCCTC

Function

NR:

description
PREDICTED: fibronectin type III domain-containing protein 3B-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU378 True 658 lncRNA 0.52 2 845542 851944

Neighbor

gene id symbol gene type direction distance location
LOC103025162 NA coding downstream 131561 708344 ~ 713981 (-)
pxylp1 pxylp1 coding downstream 320035 504270 ~ 525507 (-)
LOC103031067 NA coding downstream 381708 448578 ~ 463834 (-)
LOC111195070 LOC108442280 coding downstream 541794 295258 ~ 303748 (-)
LOC103029691 LOC108443634 coding downstream 654158 185208 ~ 191384 (-)
LOC103043916 NA coding upstream 12854 864798 ~ 871979 (-)
LOC103021504 LOC103021504,LOC108442331 coding upstream 286301 1138245 ~ 1146382 (-)
LOC111192362 NA coding upstream 641222 1493166 ~ 1496427 (-)
rabggtb rabggtb,LOC107732517,LOC107584851,LOC107576861 coding upstream 855795 1707739 ~ 1717654 (-)
acadm acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding upstream 867868 1719812 ~ 1729386 (-)
G178 LOC108440468,LOC108278266 non-coding downstream 266991 556165 ~ 578551 (-)
G170 NA non-coding downstream 383187 445455 ~ 462355 (-)
G151 NA non-coding downstream 480495 343925 ~ 365047 (-)
G146 NA non-coding downstream 496626 288076 ~ 348916 (-)
G303 NA non-coding upstream 3126 855070 ~ 855489 (-)
G315 NA non-coding upstream 52668 904612 ~ 905544 (-)
G328 NA non-coding upstream 97889 949833 ~ 950520 (-)
LOC111191897 NA non-coding upstream 122507 974451 ~ 1008505 (-)
G339 NA non-coding upstream 130242 982186 ~ 1030058 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 174827 589669 ~ 670715 (-)
LOC111197534 NA other upstream 3635 855579 ~ 856160 (-)
yipf1 yipf1 other upstream 1012571 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 1068536 1920480 ~ 1928255 (-)
znf414 NA other upstream 1571769 2423713 ~ 2434401 (-)
G807 NA other upstream 1698272 2550216 ~ 2600511 (-)

Expression


Co-expression Network