G178 (LOC108440468,LOC108278266)


Basic Information

Item Value
gene id G178
gene name LOC108440468,LOC108278266
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 556165 ~ 578551 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU229
AGCACTGGGGTTAAGTCATGGGCGGAGCCAAAGGGGCAGGCGGCCAATCAGGAACAAATAATCCGCGTCATGAGTAAGATGGGAGGTGGCACCACCATAAGGTCTAGCAGCCCATCAGAAACGGAGGAGGAAATCCCATCTGAAGTGAAAGAGCTTCAGCTTCCTCGCGAGCCTCAACTTTTCTTCCACAGACCACGAAAAACCAAACCAGCCCCAAATAATCCAGATTAAAGCTTCAACAACTTAATAAACCGGtttaaacaatgaaataaacCTCCCCCCGTGTaaacacagcagtgtgtgtctgtgtgcgagTGTGCGCGAgtcctcctgtgtgtgtgtgttacagtgtgtgatCCGGGGCGGAGCCTCAAAGGCCGCTCCAGCCAATCGGCGCCTTTG
>TU232
GTTgctttgtaatatattttttctgcttcAGGAGTgggaaaaaacactaaataaatgactaattCTTAAATTTGGTTTTGTACAATCGTTTTGTCTATTATCTTTGTGCTTTTACACTGGATACTGTCAAAGCTTTTCCTCTCTCATTCACTggatttgtcttgtttttctacctgtctgttttattattgtcttttttgtCCTCTTCTCTCGctgcctcaaaaaaaaaaaaaaaaaaaaaaaaaaaacagacacggTTTTGgtttgtgtgcatttttattcacatttaaaaagaagCTCTGGACAGAACCGTGTCTGCCGGTCCCTGGACGTCCCGCAGGAACAGTGTCGCCTCCTGTCCTGACCGCTGGAGACAGGCACGTCTTGAAAAAGATTAAAATCCTATAAAATCATATGCGACAATCTGCGCGCGTGATCGTCCGCGCTCACCAGTCTCATCGTCTTATCGTTTCATCGTAGGCACGAACAAGGATCATCCTCAAAACACTGCGGTTCCTGGGATAAAACACttcaaataaaagagaaaaggcCTCTGACAGTGTAGGTGCACGTTAGAAAGCACTGGATTAGAGTTAAAGGGTGAGCTCGACCCAACATGCTAACCCAGCGCGGTGGCTAGGGGTGTGTGGAAGCTAGCTTTCACCAGTTGGGTAAGTGATGCTACGACTGGTGGCTATTGGATTTGTGTTGCTACAACATTAGCATTTTTGGTTAAACTGTCGCTTGTGTgcgtgtatgtatatatgtgtgcgtGAATATTTAGTGTAGTGTTAATGTTGGTGTTTGTACGGAAGACATGCGTTGTGTCCTTGTGATAAAATCATAAGCTACCGTCTGCTGTGCtctttgggggaaaaaaaattaagaaaacacacacacgttgacacacactcgcacactaaAAACACGCAAACACACTCCGATACGATACTGTATCCAGCTGATCCAGGCAGCTGCTGCCCAGAGGAGTAGTCTGGAAATGGCGGCGGCTACAGACAGGTGAGTCCTGTCGCGGGTTTGAGGTCACTGGTGCTGTAGGTAGTTTTGGGGTTGGGTGCTGAGCTGAGAGTCCGTCACTGGTACTGCAGGTAGTTTTTCAGCGTCTGTGGGAGAGGCAGTGATTGGATGTGGTGGATGCGGTGGCGGCCCAGAGCCTGCCGGGCTGCTCTCCTGCACAGCTCCATCAACGGAAGAGGCTCGGGGTCCAGGCCGTTGACGTAGGTCATGGTGACCTCACAGTGACCCCACACAGCACTGACGATCGGATATAGCTTCATCCCTTTCAGCCCACGAAAGGCCATGCCCAGGAAGCGTCCATCTGCGCAGAACCCCAGCGTACCCTCATCCATGTCCAATACCACCAGCACCTCCTCTGGCACCGAGAACACGCCTTCATCGTCATCATCTTCCTCAGGCAGAGGGTACGATGGCGGCTGTCCGGTTTGGCTCTTTCTGTCGTGGTAAAGTTTCCCCCGGCCCAAATCCCACCCCCAGGATTCGGCATCGCTGCCGACCAGAGCAGTGTACCCGACCGCGTGCAGCGGCGCCAGAGAGGTCGCGACCCCTATTACTGCATGAGTGCCGCGCTGGCGGATGGGCCAGCGGATGGTCCAGGCGTGAAGACCCCGTACATACCCGACTCGTCCTCGGGCGCAGTCCGTGCTTTGGGCCACCGGGTGGCGATGAAACGTCAGTTTATCTTCGTctttaatgaataaattaagCGAGCGGTCGTTCGGGTTCCAGGCGTGTTGAAGCTGGCTGGCCACGCCCACCGGAGGCATGTCCAGCAGCAGCTCGAGGCGGGGGGAGAGCAAGCGGCCGCGGCCCCTGAGAGGCAGGAACGCCGGGCGAAAGGCCAGAGCGACCCCCGGACCCCCGCGCTCCTCCTCCGCCGTCGACTTCACCACGGCGAGAGTCTCTGCCCCAtcacagcccagccacgggcatCGCCAACCAGCACTGGGGTTAAGTCATGGGCGGAGCCAAAGGGGCAGGCGGCCAATCAGGAACAAATAATCCGCGTCATGAGTAAGATGGGAGGTGGCACCACCATAAGGTCAACAAGAAACTCACCTAGCAGCCCATCAGAAACGGAGGAGGAAATCCCATCTGAAGTGAAAGAGCTTCAGCTTCCTCCTCAACTTTTCTTCCACAGACCACGAAAAACCAAACCAGCCCCAAATAATCCAGATTAAAGCTTCAACAACTTAATAAACCGGtttaaacaatgaaataaacCTCCCCCCGTGTaaacacagcagtgtgtgtctgtgtgcgagTGTGCGCGAgtcctcctgtgtgtgtgtgttacagtgtgtgatCCGGGGCGGAGCCTCAAAGGCCGCTCCAGCCAATCGGCGCCTTTG

Function

NR:

description
PREDICTED: SPRY domain-containing SOCS box protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229 False 402 lncRNA 0.48 3 556165 575040
TU232 True 2390 lncRNA 0.50 4 556165 578551

Neighbor

gene id symbol gene type direction distance location
pxylp1 pxylp1 coding downstream 30658 504270 ~ 525507 (-)
LOC103031067 NA coding downstream 92331 448578 ~ 463834 (-)
LOC111195070 LOC108442280 coding downstream 252417 295258 ~ 303748 (-)
LOC103029691 LOC108443634 coding downstream 364781 185208 ~ 191384 (-)
pccb pccb,LOC107688488,LOC107722577,LOC107680238,LOC107709888 coding downstream 381338 167306 ~ 174827 (-)
LOC103025162 NA coding upstream 129793 708344 ~ 713981 (-)
LOC103043916 NA coding upstream 286247 864798 ~ 871979 (-)
LOC103021504 LOC103021504,LOC108442331 coding upstream 559694 1138245 ~ 1146382 (-)
LOC111192362 NA coding upstream 914615 1493166 ~ 1496427 (-)
rabggtb rabggtb,LOC107732517,LOC107584851,LOC107576861 coding upstream 1129188 1707739 ~ 1717654 (-)
G170 NA non-coding downstream 93810 445455 ~ 462355 (-)
G151 NA non-coding downstream 191118 343925 ~ 365047 (-)
G146 NA non-coding downstream 207249 288076 ~ 348916 (-)
G147 NA non-coding downstream 208929 289663 ~ 347236 (-)
G149 NA non-coding downstream 212568 341518 ~ 343597 (-)
G301 LOC108442328 non-coding upstream 266991 845542 ~ 851944 (-)
G303 NA non-coding upstream 276519 855070 ~ 855489 (-)
G315 NA non-coding upstream 326061 904612 ~ 905544 (-)
G328 NA non-coding upstream 371282 949833 ~ 950520 (-)
LOC111191897 NA non-coding upstream 395900 974451 ~ 1008505 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other upstream 11118 589669 ~ 670715 (-)
LOC111197534 NA other upstream 277028 855579 ~ 856160 (-)
yipf1 yipf1 other upstream 1285964 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 1341929 1920480 ~ 1928255 (-)
znf414 NA other upstream 1845162 2423713 ~ 2434401 (-)

Expression


Co-expression Network