RNA id: TU180919


Basic Information

Item Value
RNA id TU180919
length 2070
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G133773
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 22321300 ~ 22331156 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTGGCCAGTaaaattgGATACCCTAAAATTGCCCtggtgagtgaatgtgtgtgcgtATGACTGTATGGTCAGATATGGATTAGCACTCTGGCTGGGTCAACTCCTCCATGTCCGATGCAGCCCTCCAGGTGGACGGacgtttctggttgagagtatgctgtgtgtgattggctgctgcttctcagtgtgtgctgagtgtgtgtggaatgtaatTGGAAGCATATTTGAAGGCCTTGATTGGAAAAAGGCACTCTATATTAGTGTGAttgtaagtaaatattttttgaacTATGAGAGTTTTCCTAATCTTTCCATTATGTCTCCttacttacagtattgcaatatattgtgatatactgaATTGTATCCTCTGTATTGTGGTATGTATTATTTCCAGAGGTGTCAAGTcataaagtacaaatacttaattcttttaattatctTTAATTTTGGTTTggagtacattttttttagccgGCTTTTTACTTTCAATTTCATTTGGGCTTGTTTTTATTCCAGCTTGCCATcgtccaaaaaaacaaaacaaaacacaacctATCCAGATAACCAGTGCTTTTTTCCAGTACTCAAgcttgatacttcaacttctacacaAGTACTTTAAACCCTAGTATgttctatatacagctctggaaaaaaaataagagaccacttaaaaataataagtttttTCCTTTGActttataatcaagaggaaatggatgatcacaagccatcaaactaagctgaactgcttgaatttttgcaccaggagtgcaggaataacgttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgatatctgaactcttaaaactgaaattaatatgaacttgttttctttgcattatttgaggtttgaaagctctgttcagccatttctcattttctgcaaataaatgctcacaatatttttatttggaatttgggagaaatgttgtccctagtttatagaataaaacagtaattttcattatctataaatagcaaaatcagagtaacTGATTTAttgaaactgaagtgctctctttattttttttttcagagctgtacttttacctaagtaatattaatatcaatTCTTTTGCAACATTTGATTGCATAGCCAAGTCTTTGCCAATACACACAGCTCTACCACCCAAAGCAGAAGAGCTATAAAGTgaatctgaaagggttaaactttGTGACCTGGATTACAATGGCCTGCATTTACTACTCACTTCCTACATCTAACCTGCATCAGCATCTATATGAGTAGATCTGGTTTCAGACCCGACACTTCCATTCGCTTCTGCTCCTCTCGGCTCTTCCGATCCATCATCATGTCTTCCGTCCTGCGCCTGTCTTCCACGCATCCGTCCATCTTCCCTTCTTCCCTTCCTTTCcaactacccccccccccccaactctTCTTCACCACCGTCTTCCATCAGGAAGCCCACACTTCAAAGCAAAAACCACTTCAGCACTTTATGGACCTCAGGATGAGCTTTTATTGATCAGACGCATGCATTAAGGATCGCGACAAGAGAAGTCGGGAGgggggaggagaggagaaaaggAACGATTGCTTTACTTATTCAACATCCCTGACGTCCAGCAGCCCtgcctccatccctccctctcgGCTCATccctccccatctctctctctttcaccggAGAGACAAGAAATCAATGGGCACCCATAAAGCCCAGCCGCCCCGTACCGTGGTGACAGTGATTTGGCTTGAACACATAATCAGAGATTACAGCTCATAAATAGCAGAAGGCATGACATGGGTAATACTCACCCGGGTTTTAATAACCCGCAGAGTGTTTAATCATGTTATTAGGCATCATAAAGAACGGCGGGGAATGTATCGGACCGCCGTTGTGGCTGGATCAGCAAATCCATACAGGCGCGCTCCACAGGACAGTCAGATCCTGTCAGACCCTGCCAGATCGACGTCGTGGGAGATACTGTATGttcatatgtatgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180915 lncRNA downstream 39017 22280540 ~ 22282283 (-) True G133772
XR_002650920.1 lncRNA downstream 173138 22119289 ~ 22148162 (-) False LOC111194116
XR_002650921.1 lncRNA downstream 173138 22119289 ~ 22148162 (-) True LOC111194116
TU180873 lncRNA downstream 213284 22106561 ~ 22108016 (-) True G133741
XR_002650917.1 lncRNA downstream 254020 22063954 ~ 22067280 (-) True LOC111194113
TU180939 lncRNA upstream 16617 22347773 ~ 22348033 (-) True G133779
TU180969 lncRNA upstream 81381 22412537 ~ 22418169 (-) True G133808
TU180982 lncRNA upstream 147723 22478879 ~ 22479123 (-) True G133821
TU180983 lncRNA upstream 148683 22479839 ~ 22480253 (-) True G133822
TU180986 lncRNA upstream 164920 22496076 ~ 22496313 (-) True G133825
XM_007250780.3 mRNA downstream 152855 22159793 ~ 22168445 (-) False gata5
XM_022677342.1 mRNA downstream 153144 22159793 ~ 22168156 (-) True gata5
XM_007250778.3 mRNA downstream 222151 22074057 ~ 22099149 (-) False rbbp8nl
XM_022677343.1 mRNA upstream 1838 22332994 ~ 22337950 (-) True LOC111194118
XM_022677344.1 mRNA upstream 1931 22333087 ~ 22337949 (-) False LOC111194118
XM_007250793.2 mRNA upstream 38897 22370053 ~ 22372717 (-) True LOC103041770
XM_007250788.3 mRNA upstream 478155 22809311 ~ 22837730 (-) True LOC103039708
XM_007250789.3 mRNA upstream 508241 22839397 ~ 22847911 (-) True LOC103040235
XR_453236.3 other downstream 3009256 19206943 ~ 19312044 (-) False LOC103040989
TU180030 other downstream 3332303 18978917 ~ 18988997 (-) False G133109
XR_002650908.1 other downstream 3336635 18983017 ~ 18984665 (-) True LOC111194102
TU180032 other downstream 3340909 18969635 ~ 18980391 (-) True G133109
TU181092 other upstream 508250 22839406 ~ 22847899 (-) False LOC103040235
XR_002650923.1 other upstream 559490 22890646 ~ 22898258 (-) True LOC103038244
XR_002650924.1 other upstream 578665 22909821 ~ 22916384 (-) False LOC103034468
TU181382 other upstream 1293125 23624281 ~ 23631155 (-) True G134093
TU181672 other upstream 1941588 24272744 ~ 24273069 (-) True G134312

Expression Profile