RNA id: XM_007228964.3


Basic Information

Item Value
RNA id XM_007228964.3
length 1707
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC103035433
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 30610314 ~ 30632870 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTCACGGCGGGACCGGGGAACGAGGAAGCGCTCGGGTACTAATGTGCGGCTAGCTCTCTCTCACTGACACAGCTCTCCGCCCTCCGCTGCGCTGTTTTACCCTCCCGCCGCGATTCTCCGCCGCGTTTCTCCGTGTTTACCGGGAGCAGATAGATaGAAGATGAGCGCCCTCCCGCTCTCTCGTTCGGAGGTGTTCGGGGAGCTGCGAAAAGAGCTGTATGAGGATGTGGAGTTTCATCACTCCGACGTGCACATCTTCATCATCATGGGGGCCTCGggAGATCTGGCAAAAAAGAAGATTTATCCTACTCTGTGgtggTTGTTCAGGGACGGTCTTCTTCCAGAGCAGACGTTCTTTGTTGGCTTTGCTCGCTCTGACCTGACCGTGGATGCCATTCGCACTGCCTGTCTTCCTCACATGAAGGTGGCAGATACTGAAGCAGACCGTCTCGCGGCCTTCTTTAAACGTAACTCCTATATAAGTGGGAAGTACGGAGAAGAGTCTGCGTTCTCCAACCTGCATTCACACCTGCTTTCACTGCCTGGAGGAGCTGATGCCAACCGCCTCTTCTACCTGGCCCTGCCACCCACTGTGTACCACGATGTCACTAAGAACATCCGCAATCAGTGCATGAGCAGCAAAGGGTGGAACAGAGTGATTGTAGAGAAGCCGTTTGGACGGGACCTGCAGAGCTCCGAGGAACTGTCCAATCACCTCTCCTCGCTCTTTACTGAGGACCAGATCTACCGCATAGACCATTATCTCGGCAAGGAGATGGTGCAGAACCTCATGGTCCTCAGGTTTGGAAACAGGATATTTGGACCCATCTGGAACAGGGATAATGTGGCCTGTGTGGTCCTGACCTTCAAAGAACCTTTTGGAACCCAGGGAAGAGGGGGATACTTTGATGACTTTGGTATTATCCGTGATGTGATGCAAAATCACCTGCTGCAGATGTTGTGTCTGGTGGCCATGGAGAAACCCGCCTCCACCAGCTCTGATGATGTGAGAGACGAGAAGGTGAAAGTGTTGAAGTGTGTGGCACCAGTTACTTCTTCAGATGTAGTTTTGGGTCAGTATGTTGGAGACCCAGAGGGGGAAGGAGAGGCTAAGCTGGGTTACCTGGATGACCCGACCGTCCCTAAAGGCTCCACACAGGCTACGTTCGCCACGGCTGTGCTGTATGTACGGAATGAACGCTGGGACGGTGTGCCCTTCATCCTGAGGTGTGGGAAGGCGCTGAACGAGCGGAAGGCGGAGGTGCGGCTGCAGTTCACCGACGTGCCCGGGGATATCTTTAATGCGCAGTGCCGCAGGAACGAGCTGGTGGTGCGAGTTCAGCCCAATGAGGCCATATACGCCAAGATGATGAGCAAGAAACCTGGAGTGTACTTCAGCCCTGAGGAGACTGAGCTGGACCTGACCTACCGCAGCAGATACCGGGATGTCAAGCTTCCAGATGCGTATGAGCGTCTGATTCTGGATGTGTTCTGTGGCAGTCAGATGCACTTTGTGCgcagTGACGAATTGAGGGAAGCGTGGAGGATCTTCACCCCACTTCTTCATCAGATAGAAAAGGAGAAGGTTCCACCCATTAAGTATAAATAtggaagCCGAGGTCCTCAGGAAGCAGATGACCTGGTGCAGAAGGTCGGGTTCCGCTACGAGGGAACATACAAATGGGTCAACCCCCATAAACTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184310 lncRNA downstream 169412 30442540 ~ 30442747 (-) True G136255
TU184276 lncRNA downstream 284314 30321610 ~ 30327845 (-) True G136225
TU184237 lncRNA downstream 437601 30133620 ~ 30174558 (-) True G136198
TU184213 lncRNA downstream 524822 30087111 ~ 30087337 (-) True G136174
TU184212 lncRNA downstream 560123 30048281 ~ 30052036 (-) False G136173
TU184495 lncRNA upstream 117506 30750243 ~ 30756186 (-) True G136390
TU184522 lncRNA upstream 272176 30904913 ~ 30911787 (-) True G136410
TU184520 lncRNA upstream 279129 30911866 ~ 30914631 (-) False G136410
TU184525 lncRNA upstream 286431 30919168 ~ 30919973 (-) True G136413
TU184527 lncRNA upstream 295914 30928651 ~ 30929588 (-) True G136415
XM_022677546.1 mRNA downstream 5113 30601327 ~ 30607046 (-) False naa10
XM_022677545.1 mRNA downstream 5113 30601327 ~ 30607046 (-) True naa10
XM_022677536.1 mRNA downstream 525598 30057146 ~ 30086561 (-) True prpf6
XM_022677500.1 mRNA downstream 622893 29947782 ~ 29989266 (-) False LOC103043043
XM_007228960.3 mRNA upstream 2439 30635176 ~ 30647734 (-) False LOC103034470
XM_007228961.3 mRNA upstream 2439 30635176 ~ 30647734 (-) True LOC103034470
XM_022677549.1 mRNA upstream 2439 30635176 ~ 30647579 (-) False LOC103034470
XM_022677550.1 mRNA upstream 25485 30658222 ~ 30684827 (-) True LOC103041051
XM_007237473.3 mRNA upstream 391993 31024730 ~ 31080764 (-) False scml2
TU184211 other downstream 556431 30048281 ~ 30055728 (-) True G136173
TU183933 other downstream 1331467 29274161 ~ 29280692 (-) True LOC103038817
TU183860 other downstream 1490488 29067891 ~ 29121671 (-) True G135910
TU183807 other downstream 1800522 28809323 ~ 28811637 (-) False LOC103037426
XR_002650939.1 other downstream 2534237 28068697 ~ 28077922 (-) False LOC111194130
TU184848 other upstream 1734456 32367193 ~ 32367462 (-) True G136691
TU184957 other upstream 2150337 32783074 ~ 32784304 (-) True G136773
XR_002650953.1 other upstream 2855141 33487878 ~ 33511025 (-) False pi16
TU185281 other upstream 2914618 33547355 ~ 33550978 (-) True G137043
TU185350 other upstream 3130737 33763474 ~ 33763827 (-) True G137098

Expression Profile