RNA id: XM_007249905.3


Basic Information

Item Value
RNA id XM_007249905.3
length 6325
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC103032451
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 25023867 ~ 25043285 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTACGTCAGAGGCATAATGGCGGAGGAGGCTGGTTGAGAAGGAGAATTACTCCGTGAAGCGGCGCTGAAACCAACTTCATCGCCCGTGGACGAGGAGATCGGCGGTCCCCTCCCCCCACCTCCCCCCTCCCCGGAAAAAAATGGCCTGCAATTTCAACGAAGACAGAAAACTCGACAAGGACGGCGTGAAAGCGGCGGGCGGCGGCGGCTTGTCCGCGGACAGCGGCGGCGGAGAGAGCCAGAAACTATTGTCAGCCTCCGCCGCGACCACATCCAGGCAAAATGGCGATCAGGCTGGATGTGAAGACGAGCAAATGTCTGAACAAGACGCTGCTGAGCGGCGGAGGAGCTCGCTGTCAGACGCCAGGCACGGCGGCGGCTCTCCCTCCACCCTGCAGAAGCCCGCCGAGGAACTGCCACGGAAGAATTTCCAGATTCCTCGGAAGATTAAAGAACGGAAAGGACTCCTCCAGATGTTGCCTCCAGATTCACGGGAGTTTGAGGAGCTTGTAAAGGTCCTCTCATCCTTCTATCTGGATGCACCTTCTCGAGGAGCTTTCACCTACACCAAAGCATGTCTCATTCATAATGAGCTCCTGGAAAAAGAGTTTGTTGAGAAGAAAAGGGAACTCAAACAGGCTGGACGGACCGAAGCTGAGCTCACAGAATCCTATGCCTTTCTGCTGCCTGATACAAACAAGACTCACTGGATCTGTGAAAAGGGCCTGTCAGTGGGACATGCACGGCTTAGCAATTTGGGAAATCCTGCTAAAGgggttTACCTTTCAAAATACTCAGATTTGTTGCAGATAAATCCATTTGATGCAGGTGCATCTGgggatattattatatttaaagtcatgaagGGTAGATTGAAGAGCATATTTGAAAACATGCCCAAGAGTAATTTGGAACCAGCACCTAAGTTTGACTGCCATGTACACAAAAATGCCAGCAAAGTGACCTCACTGTTATCATATAGGGCCTTTGAGCTCACTCAGCAATACTTTTATGAGTTTGCGTTTGACGAGCTGAAGTCCCGGCCCAGGCATGTGTGTCCGTATGCTGTGGTGTCTTTCCAGTACAAAGGCAAAGAATCAGCCACTGCTGCTCACAGatTAAGCAGTTCTATGTATGAAGGAAATCGAGTACGGCGAAGGTACACAGTGTGGAGTGGCCCGCTGGTTAACAAGGGGGAAGAGCTGTATCAAGTGTGCATCCGTTCCCCCAGTCTCCCTTTCCTTCCCCTCAAACTTCCTGATAAAATAGACATAAGCATGGTAATGCACCTCGACCAAGTGAAGAGGAAAATTCCTTCCACGCTGCTTTCATGGGACACCTACAGTGGAACACGAGAGGCACTGAAGTGTGGGATGTATGCTAGTCTATTTGAAGTCATGGGGAAGACCAAACAAGGCAACTGCCTGTCTGGACTTCTTCAAAGAATGGAGAGGGAAAAAATGGTCCTTGTGAAGCCCCTGGTGGACAGAggctttctgtttctcttatcGTCGTCTCACATGCACAGTTCTAATGAGAGGCGAGGGAGGAGTGATCGAGGATTACAGgcactttttattttccaaGAACCAAGAATCATGACACGGTCCTTCTCGAAGCACGCTGGCCATCATGAGGCAGTTCCTTTAGAGCCCAAAGACCCAATCACTGAGCATCTACACACCTTTGTCCCTGCACTGCACCATGCCTTCTTCAAGCTGCGCTCCAATCCCCCCAGAGACCTGGGAGCAGGCGTTAAAAACCAGGCTCTGGATTATCTGGGTGTCCAGGAGCAAGGAATGGGACGCCCCTTTTTGGTGCCCGAGTACCGGACAAGCATGGATGAGCGCCCCAACCTGCACCCTGCACCTCGACCCAAGGGTATGGACTCTGCTCTGAGTTCTTACATGTACGGACCCAGTAACTTTCAGCTGCCGGTGACGCGTCTGCAGCAAGGCCTGCTGGACAGCGGGCAGCGCGGGTCTGTGTCTCCACCTGGTGGAGGAGCTGAGGAGTACAGCCCTGTGTCGGACTGGGGAGGTTCGGACCGTGCCTCGAGCAGCGGCCGGGCGGGTCCGGCGCCGGCACAGTCTAACGGCAGTGCCCAAAGGGCGCAGAAGAGCCAGACTGATTACGAAAAGGAAAAGATGGAGAAGCTGCTAAAACTGATCCAGCTGCACAAGCGTGCACGGGGTAAAGACGACGTCGGTGAGCCCGAGCGAAGTGATGAGTGGGACGCTGCTGGCCTTAAGAGGAGACTGGAGGGGGATATGCCTAGCAGTGTCAGCAAGTACCTGAACACGGGCCTTCTGAGCAACGGAGAGCAAGGGAGAGTTCCTCAGGGCGACAAGCCTCTCTCACTGTCGACGGTGATGGACGACATGGGGCTGTGCGACACGGACCTCCGGGAACAAGTCACCAACAGCGCCTCCCTCCAGGACACGCAGGCCCTCCTCAAGCTTTTCCTCAGCGCCTTAAACAAGGTTGCCCAGGGCtccactgctgctgccgctgctgttgctgctgcggCTGATGCCATAACCGCCACACCTGCTGCTTCCACACAGCACCAAGACAGCTCGGGCCCCCCAGAGCCCACCACACACTGTGACCGTGACCTTCGCCCCAAACCTGCTGAGCAGGACCAGACCACACAGGACTACCTAGAGgCATGCAGTATTAGCAGTATGGACCTGTGCAGTCCATCATCCAGTATTGAGCAGCAGCCGTCCCGCACATCTGAACCTCCCAGCAGCCATAACCGCTTACAGTGGAGAGCAGGCTCCACAGTTTCTGACTCTGGGGTTGATGTATTGGTGGCGAACAAATCTGGGCAAGCAGGCGGTAAAATGCTAGACACTATCCTCGACCAGGAGTTCCAGAACCTCTGCACGGGAATTCAAAAAGTGATGGACAGCCATCAAATACTGTATGTTCCCCAGCCCCAGCCACCTTGGCACAAGGGTAAAGTCAATGGGTTGGACTCCACCTTCTCTTCGTACGTGTCAAACTACGTCTCGCCACCAACTGTGCAAACTTACATCAACTCTCTGTGTGAAAAAATGAACCGCATGATTCGCTCACCTGGTGCTCCTTCAAACTCACTGGCCAATCCTGCTGCTCCTACTGTTACTGCCCCTCTTCCTGCTCCAGTCCCTTCTTCTCAAGCAGCAGCGGCTCCTCCTTCTACAATTCCTGCACCTCCTCCTGCTCTTCCCTCCAAACCACCAGCCCCTAAGCTTAAATCAAACGAATCTTTACACAAACCCACACCACCTGAACACAAGCCTCATACCCCCTCTTCAACTCCTTCTCCTACCCCTGCCCCCAAGAAACACCCGTCCCCTACCAGCAAGCCCCCCCGGCTCGGCACTGTCAAAGAGGTGCATATGGCCATACCAGGGAAAAAGACTGACCCTAAGGTCCCCAACATTGCAGAGAGTCCAGTGTGTCTGCCTTCAGCAGGCATCCCAGCTCTCCCACTCATACCCGAGCTGCCGCCTGACCCAGCCCAGGTGGGGGGAAGTAACGTGATTGGTCAGATCAAGCCGGAGGTGTTATGCACTCTGATGGAAATCATGCAGATGAACGCAGTAAGGTTTTATATCAAGCGAGGGGATCAGGATGAGAACGAGCTCTGCACTGAGATTAAGGTGTATTTGCAAAGCCTCGGCAATATTGAATGCGACCCTCAGACGTATCTGGAAAACAACTGCCAGCAAAAGTTTATGGTCATTATTCAGAATGAGGACATAGCAACTCATGTTCACAAGATTCCAGCCCTAGTGTCATTAAAGAAGCTATCTACGGTGTACTTTGCTGGAGTGGACAGTCTAGATGATGTAAAAAACCGCACTTATAATGAGCTTTTTGTTTCTGGAGGCCTCATCGTTTCAGATGAGCTCATCCTCAGCCCTGACTACATCACTCTAGAAAAGATGCAGATGTTCCTTCAGTTTCTGGAGAGTCAGAACTTGTCGTGGAAATGGAAGGTACACTGCAAGACGCAGAAGAAGCTGAAAGAGCTCAGCAGGTTAAACTCTGAAGCTCTGGATTTGTTGAACCTGCTGACAATCTATCAGAAGAAGCACCTAGTTGAGTTTTTGCCTTACCATGAGTGTGATGCTCCCTCCAGGCAAGCTCCAGATCTTGACTGCCTGGTGAAGTTACAGGCTCAGCACTCACAACTCCGACACATCATTTTCCTCACAGATAAACCATTTGATGTTTCCAAGTTCTCAAGTAATGGCATCATGATTGCTAGTATAACCGACATCATGACTAACTTTGAGAGTCTGATAAGCAGTACTAAATCTGAGGTGCCTGCTCTCCTGGCTCCAGCGGAAACTGATGCATGCGTGGGTGAGGAGGACATGTCCTTGGACTCGGATGAGGACGCAACTTCGGCATCTGTTGTCTCTAAGaacacagaggaagagagaaccTCGCTCCCTCCTCTGCCTCAGAGTGAAGAGTTTCGGCCCCCTCTCCCTGAACTCCCTGTTCAGGACCCTCTGTCGTCTTTCCCCGTTGACTACAACGTTCTGAAGTTGGCCATCTCAGAATACAAGGCgtccaggcaaagcagcacatcCTCAGCTGATTTAGAGGACAGCTTGACCAGTTTCGGGGTTAATCCTCACCAGAGTTACCTGTACCCCAGCTCGGCACAGTGGAGTCCGTACTCTGGCTCTCCCGGCTACCATGTGGGCTCAGCCTATTCTTCTCCCGCCTGCTCGACCTCTCAAGGGCAGGAGCTCAGCCAGGCCAGCACCATGAGCATAACTCAgggcagtgctgctgctgctgctgttccacTTTCTCAAACTTCTTCTCTGCTCCAGGCTATCCCTAGCACTCTCCCTCCTCTTAACCCTTCCACATTACACCCTGCTAACTCAGCTCTACTGCCCCCTGCCAGCAACTCTCCCCTGCCTGTGCCCCAGGCCTCTACCGGCAGCATAGCAGAGGCCCTACCTGTTCCACAGGCAACATCCTGTCCTCAGGCCCAGGCTGATGATGCTATGGTAGCCTTAACCAGTAGCATCAGTCAGGTTGTACAGAATAAAGCCATCGAATCCACAGCCCTCACGTCCTCTTCAAGCTCGTCCTCCTCATCTCTACCCACTTACCCAGAACCTTCAATGTTCCCTGCACTCACACCCATCCCCCCAGTACCCCCAATGCCCATTCTTAACTGGGCAGCTGCACCAGGTCCACATCAGAGCTATCCACCAGGAGTAAACAGGGGGGCTTTCGGTCCTCTCCCCTCATTGCAGAACGAAGCTGCGAGGACACCATCTTCTTCAGCTGCCGTAAATCCGTTGTGGGCAGGAGCTGGTGACTGTGCGACCCCTAAAAGTAAAGTTGAGGGAAGCACACCTGGGTCAGCATCTTCTACAGTCCCACTGCAGGAAGCGGGGCTGGAGAAGGGCAGCACTCCCGAAAGCCTCATGCCCGGCAGCCAAGGCAGCAGGACTCCACTGAACTCTTGCTCAGAGAGCCATGGTGTTGGTCCTCCTCAGCCTCACGCTGGAGGTCTTGCATCTGGAAGGGGGGGTGGcggtggtgctgctgctgctgccatcCCAAGAGGACTTCTTCCCCTCCCAGGAGCCGTGTGCCGAGGGGGACCACAAGGGATGGGCTCCCATGGTAGTGGCGGCGGCGGCACATATGGCCCTCGAGGGCCCATGCCGGGGCTCATGGACATGATGCGCGGAGGCTACCGAGGGAGAGGTCCCCCTCCCATGCCCATGAGGTCCAGACCAAGTCGGGGGCCTATGAGGGGCAGCTGTAACTGGGGCTACCCTTCTGGCAGGGGAGGGGGCGGAGTTCCAGATTACTACTCGGACCATCCATACCCCTAAAATGCCACGGGGAGCAGTAAATTCTCACGGACTACTTTGCGTAgagaatgtatatatttaacatgAAGAGCACATTGAACCATGatgtgggtttaaaaaaaaattaaattctgGTTTTGTATCAGTTAGATCAACAATTCACACAGCGGCCGATGTTTTGCTGTTGCTCCAAAATGCTCTTCCTTAACAAGATGTTTGAAACCTTGTCCAGACCACTATATTTATATTGCCAAGAAATGTTAATGCCTTTCAATGTTACGGCTTTTGTTTTGTCCCCCTCCTTCCTCCCAGTTTTCAAAAACGGTTTGTGATCAAGGGTCAAAGtacagacaatatttttttaaaaagaaagtgaGTCACTCTTCATTTTAGCTGGTttttgttttgagttttttttttttttacattcttggTTGTACAAAACGTTCTATTAAACAAGGTTGTATCAAACATA

Function

GO: NA

KEGG:

id description
K21873 FAM208A; protein TASOR

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181982 lncRNA downstream 1404 25022232 ~ 25022463 (-) True G134535
TU181964 lncRNA downstream 193983 24829305 ~ 24829884 (-) True G134520
TU181960 lncRNA downstream 203278 24817171 ~ 24820589 (-) True G134516
TU181935 lncRNA downstream 350078 24672405 ~ 24673789 (-) True G134500
TU181930 lncRNA downstream 367295 24654166 ~ 24656572 (-) True G134497
TU182266 lncRNA upstream 147679 25190964 ~ 25191789 (-) True G134748
TU182288 lncRNA upstream 241158 25284443 ~ 25301492 (-) True LOC103026004
XR_454811.2 lncRNA upstream 251018 25294303 ~ 25302499 (-) False LOC103026004
XR_002650926.1 lncRNA upstream 251044 25294329 ~ 25303167 (-) False LOC103026004
XR_002650927.1 lncRNA upstream 251044 25294329 ~ 25301448 (-) False LOC103026004
XM_022677397.1 mRNA downstream 15617 24854201 ~ 25008250 (-) False klhdc8b
XM_022677396.1 mRNA downstream 15617 24854201 ~ 25008250 (-) True klhdc8b
XM_007249918.2 mRNA downstream 177384 24841852 ~ 24846483 (-) True guca1b
XM_007249914.3 mRNA downstream 187726 24831372 ~ 24836141 (-) False oard1
XM_007249917.3 mRNA downstream 187735 24831372 ~ 24836132 (-) False oard1
XM_022677398.1 mRNA upstream 1165 25044450 ~ 25053042 (-) False LOC103031928
XM_007249904.3 mRNA upstream 1165 25044450 ~ 25051231 (-) True LOC103031928
XM_007249902.3 mRNA upstream 10814 25054099 ~ 25098182 (-) True dnah12
XM_022677399.1 mRNA upstream 10814 25054099 ~ 25098180 (-) False dnah12
XM_007249895.3 mRNA upstream 146452 25189737 ~ 25197438 (-) True LOC103029485
trnah-gug_15 other downstream 213365 24810431 ~ 24810502 (-) True trnah-gug_15
TU181951 other downstream 214652 24806934 ~ 24809215 (-) False ebp
trnaf-gaa_3 other downstream 218224 24805571 ~ 24805643 (-) True trnaf-gaa_3
TU181775 other downstream 538139 24483977 ~ 24485728 (-) False trpc4ap
TU181779 other downstream 590398 24431159 ~ 24433469 (-) True LOC111194023
TU182421 other upstream 748602 25791887 ~ 25798373 (-) True G134867
XR_002650928.1 other upstream 761393 25804678 ~ 25805810 (-) False taf13
XR_002650929.1 other upstream 761398 25804683 ~ 25805806 (-) False taf13
TU182548 other upstream 943906 25987191 ~ 26004934 (-) True G134931
TU182776 other upstream 1536891 26580176 ~ 26581742 (-) True G135102

Expression Profile