RNA id: TU211262


Basic Information

Item Value
RNA id TU211262
length 691
RNA type TUCP
GC content 0.58
exon number 2
gene id G155776
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 2738361 ~ 2755112 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGCGCAACGGGGAGGACAGAGCACCCAGAGGCTCCCGTCTGAGAGATGGGCTCCAGCGCCCGCGCGGCTGTACCCGGTATCAGTGAGAGCGCGTCGGGCAGTGCGGGGGAGCGGCTGAGGAGCTGCTGGCGGGGTTAGAGCGCTGTAGCGGAGTTTAGGATGcgggaagaggaggaggaggacaccGCGACGTCTCCGCTCCGGATCTCCAGGACAagatggcagcagcagcagcagcgcagaCCCGAGAGCACGGAGTGAGGCgggtttaagagtttaaaatgtTCGGAGAAGCGTCGGATCTGTCCAGCTCTTCCCCTCCGTGAAGgtaTGGCCTCACAAGTTTTGGTCTACCCACCACATGTTTATCAAACTCAGACAAGTGCCTTTTGCAGTGTGAAGAAACTCAAAGTCGAACCCAACAACTGTGTTTACCATGACAGGGCCTTCCCACTGACTTTTTTGAATGGTAGAACCCTTGGCATTGCACAGCCGACGAAACTTGCACCCACGTACAAGACACGGGACTTTGCGGCCGGCAGACGCCACTGGCAGGACTTTCCAGTGCAGACTGTTGCTGTACAAGGTGTACAACGACAGGCGATCTGCGCaactgcagcagcaggagcagcagcagcacctcgTCAAGAAAGAGGTGTCCGGTCACCGGGAAAAGAGCCGGAAAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211248 lncRNA upstream 3697 2734462 ~ 2734664 (+) True G155765
TU211244 lncRNA upstream 18623 2699031 ~ 2719738 (+) True G155762
TU211238 lncRNA upstream 103753 2634162 ~ 2634608 (+) True G155757
TU211231 lncRNA upstream 162979 2575080 ~ 2575382 (+) True G155750
TU211196 lncRNA upstream 791194 1926434 ~ 1947167 (+) True G155722
TU211271 lncRNA downstream 14978 2770090 ~ 2770853 (+) True G155785
TU211278 lncRNA downstream 24475 2779587 ~ 2779883 (+) True G155792
TU211279 lncRNA downstream 25016 2780128 ~ 2780371 (+) True G155793
TU211296 lncRNA downstream 72484 2827596 ~ 2828274 (+) True G155809
TU211350 lncRNA downstream 235847 2990959 ~ 2991367 (+) True G155854
XM_022679481.1 mRNA upstream 17402 2671503 ~ 2720959 (+) False lrch3
XM_022679484.1 mRNA upstream 17402 2671503 ~ 2720959 (+) False lrch3
XM_022679479.1 mRNA upstream 22637 2671503 ~ 2715724 (+) True lrch3
XM_007243985.3 mRNA upstream 22637 2671503 ~ 2715724 (+) False lrch3
XM_007243988.3 mRNA upstream 22637 2671503 ~ 2715724 (+) False lrch3
XM_022679486.1 mRNA downstream 36927 2792039 ~ 2806754 (+) True parp9
XM_022679487.1 mRNA downstream 37518 2792630 ~ 2806754 (+) False parp9
XM_015606067.2 mRNA downstream 127715 2882827 ~ 2938070 (+) True LOC103044837
XM_007230030.2 mRNA downstream 187662 2942774 ~ 2963551 (+) True ndufa10
XM_022679492.1 mRNA downstream 855906 3611018 ~ 3614491 (+) True LOC111194753
TU210855 other upstream 1468982 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 1470166 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 1470166 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 1523698 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 2585098 149347 ~ 153263 (+) True G155206
TU211750 other downstream 2402042 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 4617264 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 4632390 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 4845455 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 5814818 8569930 ~ 8570877 (+) True G157055

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU126682 True 248 lncRNA 0.39 1 CI01000020 347430 ~ 347677 (-)
eurasian perch (Perca fluviatilis) TU126682 True 1081 lncRNA 0.42 2 NC_053120.1 7233146 ~ 7235719 (+)
striped catfish (Pangasianodon hypophthalmus) TU126682 False 698 TUCP 0.54 2 NC_047600.1 29702152 ~ 29713992 (-)