RNA id: TU212948


Basic Information

Item Value
RNA id TU212948
length 948
RNA type TUCP
GC content 0.43
exon number 1
gene id G157055
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8569930 ~ 8570877 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAACACAGACGATTGAGATTAGTCCTCCAATATGTTTTCAAGCTAAAAGCCAACCAACGAAACTCGGCATATGCATCTACATTCAGCCCATCATACACTGCACTATATGATGCCAAACCAACCCATATACAACCGCTTGGACTACGTATTCGACAGCAACTAAGGGAACTTGCAGTAGACCTCAAGGATATAGCACAGATGCCTTACAACTCCATTCCACCATGGACCCTCAAAAAACCCAGTGTACTTCTAGACCTCGCCAGTGGAAAGAAATCAGACACCCATCCAAACTTCTATCTTTCAAACAGCATGGACATTAAAGGAAAATTCCCATCCCACCTTTTCATTTACACAGATGGTTCAAAGACTGAAAACAAGGTATCAGCAGCAGTGGTAGCTGGAGAACAGGAACTACGAGTTAGACTTACTTCAACCACTGCTCAATCTTCACAGCCGAAGCCTACGCTCTCTTAATGGCAGTTGACCACGTCATCACCACAAGACAGCAGAAATCCATGATCTGCTCCGACTCCAAATCCTGTTTACAAGCACTGGACAACCTCAACACAGGTCACCCCCTAATCAACACCATTCTGAATAGATTACACAACctttcaaatgaaaatattaatataaaattctgCTGGATACCAGGACATAGTGGCTTCACTGGAAATGAAAAAGCAGACCAGGTAGCAAGAAGAACATCAAAGGCCGAAACAGCGAACTGCAAACTCCCACAAACAGATATAATGCCCCTAATTCACAAATACATCAAAGAGAAGTGGCAAGACGAATGGAAcacccaaacaaacagcaaaCTGTACGAGCTCAACCCCAAAATAGATCATTTTACCAACGCGTATATAGACAATAGATGGGATCAAGTTATTTACTCAAGATGCCGCATTGGCCACACCAGACTGACGCACTCCTTTTTACTGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212947 lncRNA upstream 1467 8568244 ~ 8568463 (+) True G157054
TU212945 lncRNA upstream 2262 8566429 ~ 8567668 (+) True G157052
TU212918 lncRNA upstream 131661 8432614 ~ 8438269 (+) True G157027
TU212912 lncRNA upstream 208180 8361520 ~ 8361750 (+) True G157022
TU212909 lncRNA upstream 212853 8356218 ~ 8357077 (+) True G157019
TU212961 lncRNA downstream 32712 8603589 ~ 8608021 (+) True G157064
TU212966 lncRNA downstream 109932 8680809 ~ 8683103 (+) True G157069
TU213140 lncRNA downstream 321213 8892090 ~ 8894941 (+) True G157210
TU213183 lncRNA downstream 377948 8948825 ~ 8949097 (+) True G157224
TU213185 lncRNA downstream 395294 8966171 ~ 8966371 (+) True G157226
XM_007233833.3 mRNA upstream 4432 8555188 ~ 8565498 (+) True prpf18
XM_007233834.3 mRNA upstream 4432 8555188 ~ 8565498 (+) False prpf18
XM_007233844.3 mRNA upstream 36763 8520018 ~ 8533167 (+) True cpt1b
XM_022679553.1 mRNA upstream 56499 8508404 ~ 8513431 (+) True LOC103026556
XM_015601452.2 mRNA upstream 56499 8509135 ~ 8513431 (+) False LOC103026556
XM_022679569.1 mRNA downstream 249225 8820102 ~ 8826458 (+) True LOC111194761
XM_022679407.1 mRNA downstream 260552 8831429 ~ 8836613 (+) True LOC103043520
XM_007250928.3 mRNA downstream 274099 8844976 ~ 8871398 (+) False LOC103030146
XM_007250927.3 mRNA downstream 274100 8844977 ~ 8871398 (+) False LOC103030146
XM_007250929.3 mRNA downstream 276681 8847558 ~ 8871398 (+) True LOC103030146
TU212659 other upstream 963262 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 1138362 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 1165374 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 3412530 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 5814818 2738361 ~ 2755112 (+) True G155776
TU213377 other downstream 1369952 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 3791574 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 4164755 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 5163068 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 6479345 15050222 ~ 15050718 (+) True G158369

Expression Profile