RNA id: TU212659


Basic Information

Item Value
RNA id TU212659
length 1727
RNA type TUCP
GC content 0.44
exon number 8
gene id G156840
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7600567 ~ 7606668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttggcatttattTGAACCATGTGCATCGATTGTGGTACATCAAAATAACCCTATTCAAATaccacaaacaaatataacatttaaaaagttcatATCAGCTTATATCAATAGAAGCAAGACAGCAAATACCACAGAGCAAACAATAATTAATCTTTAAAATCTGTcatgaatgataaaaaaatataaaaagttagACTTGAAGGCTTTTTTTCAATGGGCTTGACAATGTCGACTAAACCCATTGGCTCATTACATGTGATCTGAACCAATCGTACAGCTGCACtgagaaaaagagtgaattCGCACCAATCACACAAAAGAAACCCCAGTACTATCTGGAGCATGTGGCTGTCAGTGTGATCTAATTGGCCCTTAGCTGATGAGGTTAGAGCGAGTGCTTTGGGACAGATATCATGCAACATACAATACACTGGCAGTATCCTGGGTGAAAGGCCCTCACACAATCTCCCGGGTCTTCCTAATGGCACAGCACAGCATCATGCTAAAGACCATCCCAAAGATCATGATGACGCCAATTCCAATACCAACAGCTCCAATAATATGCAGCTTGGAGTTGAAGACCTCATCAATAGCATCAGGACAGCTCTTGATGATAAGGTCATCTAAGATGTCCTTTTTGGGGCAGGTGTCTTCAAGAATCTTCAAGTCTTCAGCTGTGTTAGAAGGTCCACAGCAGTTCAGCCTATGCTGGATCAGACGGAGGGTTTCTTTCAGAGCGTCTTGCTTGTTGTCTTTGTAGTTGCTGTATGTTTGCGTGTAGAACTGAGTGATGTCATCGACAACCTTACTCTGGTTGGAAAATCCCCAAATTCCTGCAGCTACTTCCACTGCAAAGATAAGCAacaggaagaagaagaaCAATCCCAGCATGCACGGCGACTCCTGAATGGCTCCACAGCAGCCAAAGAaccccaccaccatcatcagTGCTCCTGCGGCTATTAGGATATACAcacCTGTGTAGAACACATAGGGAGAGCTTTCCCCCTCAAACAGGTTCTTAGTCTTGGGATCAAACCTCAGCCACAGACCCACAGCCAATACTCCTGTACCTGccaaCCAGAACAGGAGGTTGAAGATAAACATCAGGTATTTTACACACGTTATGCCTCCTGGAAGCCCCATTCTGCCACAGCTGCCAGCAATTCACACGATAAACGAGGAGCAGCACGGAGAGAGCTAATCTTCTATTGTTTATGTTTCAGGCAGCGTGGAAAACTCCTCCAGGCTCTTTATCTGCTGCTAAAGTATCTACTGATCTCACCAAGCGCGCACTACTAACgtttaaaaagaggtaaaaTAAAGCGAGACTCGATGCAGGCGTGTGTTCTAGGTTAtatattagttagttagttagttttagCGTTGGTGTCGCTGCTCTGTCCCCCACACGTCTGTCTCTCCTGGGAAAACAACGAGCCAAAGATTCACACATTCAGGAAGTTGCCTTTCGCTCACCTCCTTCTGTCAGCAGATAGACTACTGAAACTCTGCTGCCATCATTTACACGTCTGGTAACTCATCTCACCACTGCTGGCATTATTATACaggttactgaaataaaaaccgCGTGATTAGATGGTGTTTAGATGCCGTTTCTGACAAACCAACAGGCTAACAAAATAGCCTCAGAGACACAGGGCTAAATTAGGCTAACGGCTGTGGAGTGCTGAGTGAGGGTTCAAGGCCCGTGACCCTCTCACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212636 lncRNA upstream 41610 7553653 ~ 7558957 (+) True G156824
TU212487 lncRNA upstream 169986 7426825 ~ 7430581 (+) True LOC111194759
TU212484 lncRNA upstream 187879 7351997 ~ 7412688 (+) True G156731
XR_002651235.1 lncRNA upstream 202210 7389106 ~ 7398357 (+) False LOC111194759
XR_002651234.1 lncRNA upstream 202210 7389106 ~ 7398357 (+) False LOC111194759
TU212683 lncRNA downstream 145535 7752203 ~ 7755664 (+) True G156856
TU212684 lncRNA downstream 145664 7752332 ~ 7755664 (+) False G156856
TU212767 lncRNA downstream 230087 7836755 ~ 7844894 (+) False G156916
TU212769 lncRNA downstream 230087 7836755 ~ 7841481 (+) True G156916
TU212771 lncRNA downstream 230087 7836755 ~ 7837772 (+) False G156916
XM_007244072.3 mRNA upstream 19362 7572151 ~ 7581205 (+) True LOC103028022
XM_015604457.2 mRNA upstream 60312 7525125 ~ 7540255 (+) True LOC103026791
XM_015604459.2 mRNA upstream 60312 7525125 ~ 7540255 (+) False LOC103026791
XM_007244067.3 mRNA upstream 146133 7446143 ~ 7454434 (+) True LOC103026191
XM_022679529.1 mRNA upstream 228672 7358284 ~ 7371895 (+) True LOC103040931
XM_022679539.1 mRNA downstream 7291 7613959 ~ 7655049 (+) True vwf
XM_022679540.1 mRNA downstream 11649 7618317 ~ 7655049 (+) False vwf
XM_007244076.3 mRNA downstream 49833 7656501 ~ 7689174 (+) True LOC103029157
XM_007244078.3 mRNA downstream 83547 7690215 ~ 7702248 (+) True LOC103029792
XM_007244079.3 mRNA downstream 106095 7712763 ~ 7718714 (+) True LOC103030109
TU212485 other upstream 168999 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 196011 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 2443167 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 4845455 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 6331188 1265820 ~ 1269379 (+) False G155491
TU212948 other downstream 963262 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2334161 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 4755783 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 5128964 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 6127277 13733945 ~ 13736102 (+) True LOC107197649

Expression Profile