RNA id: XM_022679929.1


Basic Information

Item Value
RNA id XM_022679929.1
length 1969
RNA type mRNA
GC content 0.37
exon number 6
gene id LOC111194821
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 38825323 ~ 38835978 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGGCCTTCTTCATTTTAAGTGAGGAATCTACAGAGAACCTAAGTATTTGTCTTCAAAAGCTGCAAGAGTGTGTTAATCCCTTTCAACCAAGGTAAAACTAAAAGGTCTAAAAGgtGTGTCATGGTAGACAGAGATCTTAAGGAAATCAATGCAGTGCAGAAAGTGTTCCCACACACTAGAATACTGCTGTGCTGGTTTCACGTTCTTCAGGCAGTTCATCGCTGGATGCAACGCCAAGATGAATGTAAAAAGCAACCAGCTTTGAAAAATGAAGTCATCAGGGCAATGATAGCACTCAAACAGTGTGCAACTGAAGCAGACTTTGAAGAGAGGTCAAACCAAGTAGTAGACAGCATTGATGAACTCTCAGGCACAACAACTATctcaaactatttaaaaatgcagtGGTTTCAACATTCCAAGATGTGGGCCAACTTTGGAAGAAGAGTATTCCACCAAAATAGTGAAACCAATAACTTGGCTGAGAGattCTTTTTCAGCATGAAATACCAATTTCTTCAAGGGTATGCAAACAGACGTGTAGATGACTTGCTTCATCTTTTGAGTGAGAAGGTGGTGACATATTACAGCTACCTGGAAGAACTCTACAAAGCGGGCCGGATAACTGAGTTGAAGAAACCAGACATGGGTGAACTTGTGTCTAGGATGAAATACAAAGGCTTGCATGACAAAGTTGTTTTTCAGTCTGCTGGCCAAATATTAGTACCTTCAGAAACCAGTGAGGGAAAGTGTTATTTTGTTGATCTCATCACAATGCTCTGTGAATGTGATTGGGCTGAAAGGGGAAACCTATGCAAGCACATTGCCTTGGCAAAGCACGTTTGTGAAGAAAGAGATGTGGACATAGATGAGTGCAGAAGGGAATTGGCTTGCTGTCTGTCAGAACAAGGCAGTTATGAGTGGGATGGAAATTACTTAATTGTACATCACAGGCAAAGTTTTGGAGTTGTAAACTTGCAAACAAAGCACTGCACATGTCTTGCTAGTAGCTTAAAAGAAATATGTGTGTGCCTTAGAGTTTCAGAGATCCTAGTCCTGCGGGATGGTCCAGAAGAGAACATTCAGTCATTTGAAGGTGTTTCAAACCATGTAAAAGAGCATGTAACCCCATGCAAGACTGTAAAAGAAATGATAGGGGCATTGTACAACTGGTCTGAGAGCACAGAGTTCTGTGAAAGTCCAGAATTACTGTCTGCAGTTAACAGAGTTTATCAGCTTGCTTTTGGACAGTACAGTAGCAACACAAGGAAAAGAAAGATTCAAAAGCTTCACAAGTACAGACTAAGAGTCAatgaagcaaagaaaacaatacagAACATGCACTCGTACACGCTGAAAAACAGCTTAAATCGTGCAATGCGCTCACATAGGCCTGACTCACACTTTAAAattactgcatttaaaaaaagagtcagAGATGGTAAGCACCGTATACACTTCCGTGATACTAATAAAGCCATGCAAAAATAAAGTTGCAATTGTGGCCAGTATgacttttctgtattttgtactGGGGCTGTCTCCAGTGATTACTACAAtaacaattataatatatattataattgtaaaaaacaaaatctttgAATGTTAACTGCCATTTCTGTCCATATCTCGTTTCTCCAAAAGCATTCTCAACAGCAGATAGTtccattaaataaaagaaaaacccaGATGCAGTGTTTCaaattttattaactttattaacataaatttttcttcttaaacaataaaatgcaaTCACAGTTTCTGtagttatttaagaaaaaaaatgcagaaaagaaaatgtatttgtgtTAGGATTGTTACAATAATACCTggaataatgtacagtatatgaaatataataaacatgttcacaaacatatacatgaacctttttttatgttaggaaaataaatgtacattgaCAAGTCAACttgacataataaaaaaactatacatgTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221259 lncRNA downstream 9772 38815269 ~ 38815551 (-) True G163366
TU221256 lncRNA downstream 14768 38810334 ~ 38810555 (-) True G163363
TU221251 lncRNA downstream 27818 38797158 ~ 38797505 (-) True G163358
TU221250 lncRNA downstream 30111 38794959 ~ 38795212 (-) True G163357
TU221221 lncRNA downstream 56851 38692671 ~ 38768472 (-) True G163329
TU221285 lncRNA upstream 7654 38837032 ~ 38839370 (-) True G163374
TU221310 lncRNA upstream 69329 38898707 ~ 38944097 (-) True G163397
TU221335 lncRNA upstream 189466 39018844 ~ 39019068 (-) True G163417
TU221348 lncRNA upstream 207486 39036864 ~ 39042425 (-) True G163427
TU221351 lncRNA upstream 210726 39040104 ~ 39075089 (-) True G163428
XM_007243005.3 mRNA downstream 153424 38668713 ~ 38671899 (-) True LOC103023582
XM_022679414.1 mRNA downstream 800990 37981096 ~ 38024333 (-) True LOC111194721
XM_022679922.1 mRNA downstream 849047 37964331 ~ 37976276 (-) True LOC103042980
XM_022679923.1 mRNA downstream 849048 37964331 ~ 37976275 (-) False LOC103042980
XM_007239643.3 mRNA downstream 1394494 37409987 ~ 37430829 (-) False LOC103044212
XM_022679933.1 mRNA upstream 320665 39150043 ~ 39171591 (-) False LOC103036953
XM_022679932.1 mRNA upstream 320665 39150043 ~ 39171591 (-) True LOC103036953
XM_022679936.1 mRNA upstream 362933 39192311 ~ 39234568 (-) True pstpip1
XM_022679938.1 mRNA upstream 422543 39251921 ~ 39264714 (-) True rcn2
XM_022679939.1 mRNA upstream 422543 39251921 ~ 39264708 (-) False rcn2
TU221132 other downstream 805434 37996648 ~ 38019889 (-) False LOC111194721
TU221124 other downstream 810747 37990713 ~ 38014576 (-) False LOC111194721
TU221131 other downstream 811282 37999216 ~ 38014041 (-) False LOC111194721
TU221136 other downstream 813114 38006218 ~ 38012209 (-) False LOC111194721
TU221079 other downstream 945908 37878815 ~ 37879415 (-) True G163230
TU221570 other upstream 598470 39427848 ~ 39428541 (-) True G163591
TU221572 other upstream 598470 39427848 ~ 39428541 (-) False G163591
TU221615 other upstream 661404 39490782 ~ 39493278 (-) False G163627
TU221860 other upstream 1612983 40442361 ~ 40446071 (-) True G163831
TU222040 other upstream 2179419 41008797 ~ 41009183 (-) True G163970

Expression Profile