RNA id: XM_022682460.1


Basic Information

Item Value
RNA id XM_022682460.1
length 4070
RNA type mRNA
GC content 0.52
exon number 22
gene id phf2
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16739287 ~ 16794230 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgctccTCCTCTGCTGTTGTGAATGCTGATCTAACATGGCGACCGTGCCCGTGTATTGCATCTGCAGGTTACCGTACGACGTAACCCAGTTCATGATCGAGTGCGACGCCTGTAAGGACTGGTTCCACGGCAGctgTGTTGGAGTAGACGAAGATGATGCACCAGACATTGACATCTATCACTGTCCCAACTGTGAGAAAACACACGGCAAATCCACCCtgaaaaagaaaaagaactggaATAAACATGACACGGGGCAGAGCGGGGACGTCAAACCGGTTCAGAACGGCAGTCAGGTTTTCATTAAGGAGCTCCGCAGTCGCACCTTCCCCAGCTCGGAGGATGTGGTGGTTAAGCTCAGTGGGTATCAGCTGACCATAGACTACCTGGAGGAGAACGGTTTTAACGAGCCCATTCTGATCCCGAAGAAAGACGGCCTGGCGATGACCATGCCCGCGCCCACCTTCTACGTCAGCGACGTGGAGAACTACGTCGGGCCTGATGTTCCTGTGGATGTCATCGATGTCACCAAACAGACCGACAGCAAAATGAAGCTGAAGGAATTTGTGGATTATTATTACAGcacaaacagaaagaaagtaTTAAACGTCATCAATCTGGAGTTTTCAGACACAAGGATGGACACTCTGGTGGAGAGTCCGCAGATCGTGAGGAGATTATCCTGGGTGGAGAATTACTGGCCGGACGATGCTCTGCTGGGGAAGCCGAAAGTAACTAAATACTGTCTGATCTGTGTGAAGGACAGCTACACCGACTTCCACATCGAGTGCGGCGGCGCCTCCGTCTGGTACCACGTCCTGAAGgGGGAGAAGATTTTTTTCCTAATCAAACCAACATCAGCCAACCTGTCTCTGTACGAGCGCTGGAGATCCTCCTCCAATCACTCAGAGATGTTCTTCGCCGACCAGGTGGACAAATGCTACAAGTGCACTCTGAAACAGGGCCAGACTCTCTTCATCCCGTCAGGTTGGATTAATGCAGTTCTGACGCCGGTAGACTGTCTGGCCTTCTCCGGCCACTTCGTCCACAACATGAGTGTGGAGATGCAGATGAGGGCGTACGAagtggagaaacggctgaaggtGGTGAGCCTCACGCCCTTCCCCAACTTCGAGACGGCCTGCTGGTACACGGGGAGGCACTACCTGGAGCGGTTTAAAAGTTTACACAAGGCAAACAAACAGCCAGCCCCTTACTTGGTACACGGTGCCAAAATTATCAATGGAGCCTTCAGATCCTGGACCAAGAAACAGGCCCTTTTAGAGCATGAAGATGAGCTTCCTGAGAACATGAAGCCGACGCAGCTCATTAAAGACCTTGCCAAAGAGATTCGGATTGCTGAGAACGCAACTAAAGCCATAAAGAGTGAACCAAGCAACTCCAAGCCCCCAGCAGAGGAACCGCCCTCAGCTCCACCTGAACCAGAGGAGCCTGCGTCCCCCACGCTGTCCTCCCCACCCCAGGACAAACCGGCCAGGAAGAAAGCTCCAAAACCCCCCAAACCACCAAAGCCCCCCAAGATGCCCAAGGCGCCCAAACCCCCGAAGGTGCCGAAGGTAAAGGAGGGGGGGAAGAAGAAAGGGAAGAAGGTGAAAGAAGGAGGACTACCTGAGAAAAAGCCCTCCAGCCTGGCAGCTCTGGAGTCCCACGCCAAGGACATCCTGTCCAAGATGGACCAGCCTAAGAAAGCCAAGGCTCCCAAAACCATGATGAGCCTGATGGAGAAGGAGACGAATAAACAGAACGACGTGGAGAAGTTCGAGATCCGAGAACAGAGCAAAAACAAAACGGAagccaagtggaaatacaagaACAGCAAACCAGACTCGTTACTAAAGATGGAGGAGGAGCACAAGTTTGAGAAGACGCCGCTCGGACATAAAGACAATAAATTTCTGTTTTCAATGTCGAACAAGAAATTACTGGGGGCGAAGACGCTGAAACCTCAAACTAACTCCGGCGTATTCGGATCCTTACAAAACGTAAAAGAGGACAAACCCAAACCCGTACGAGACGAGTACGAGTACGTCTCAGACGAGGGGGAGCTGAAAATCGACGAGTTTCCCATCAGGAGGAAAAAGACTCCGGTCAAGAGGGACTTTTCCTttttatcGAACATCAGAGAGCCCATCCAACCAACGAAAAAGCCAAAAACACAACCTGCAGTTATTAAGcagaACGCCGACTCCTCAGATGAAGAATCACTCCACATAGACACAGAGGCGAAGACGGAGGTCAAAGGTCGCAACTCCAAGGTGTCGAAGAAGAAGGCGAGCAGTGCGGCGGGAATCCTGGATCTCCTGCAGGCCAGCAAGCAAGTGGGCGGTATCGACTACAGCAACAACAGTCAGCCACCTGCATCCCCCAGCACACAGGAGGCCATCCAGGGCATGCTGTCCATGGCCAACCTGCAGTCCGGCGACGCCTGCGGCGGCCTGCAGCCGGCCTGGAACAACAGCCAGGCCAAGAGCAACTCTCACAGCGGCGGCGCCGGCGGCAAGAAGCCTGCGGGGGGCGCCGCCACCGGCAACGGCAAACGCACCGCCAAGCGGCCGCCCAAGAAACCGCGGAAAAGCAGCAGCGTGGACAGCGCCGACATGTTCGACGACGACCAGGACCATCTAGAGGCCTGCTTTAAAGATTCAGACTACGTTTACCCCTCGCTGGAGTCGGAAGAGGATAACCCCATTTTTAAATCGCGATCgaagaaaaggaaaaactcAGACGACACTCCGTACAGTCCAACAGCACGAGTGGGACCATCAGTACCGCGACACGAGAGGCCGGCGCGAGAGGGAGCGCGAGTCGCATCTATAGAGACGGGActcgccgccgccgccgctaaACTATCTCACCAGGAAGAGCAGCAGAAGactaagaagaagaagaagagcaccAGGAAGAAGCCCATGGTTGTGGAGGAGCCTCTCAAACACTCTCAGGATAACAGTTCATCAGAACCCAACCTGGACTCGGAAAGCAACGCGGCCGACCACGAGTACAGCACCGGACCCGGCAAACCGGCCGCCGGCCAGCCCATGGCTCCCGGAGTCTTCCTCAACCAGAAACGcccctccacctcctcccccACCAACAACacccccaacaccaccaccaccaacaccaccgcCCAGCCAGCCAAGGTGGAGCGCGGGAACTCCGCAGACGCCAAAGCCAAACGGCTAAAGAAAGGAATGGCGACGGCCAAACAGAGACTGGGGAAGATCTTAAAGATCCATCGGAACGGGAAACTCCTGCTGTAACGGggagtgaggaggaggaggagaggagtgagGGATGGGtcatgatgaagatgatgatgttgaggatgatgatgaagatcTGATTGACCCCTCACGGACTAGCCAATACCGATCCCTCACTCCTTTCCGTCCCGcccccaaaaacacacacaatactggGGACAAGGAGCGCAGGAACTGAGGAGAACTGATGAGAACTGAGGAAATATGAGGAGAAATGAGGAGAACTGATGAGAAAGGAGGAGAAATGAGGAGCTCGAGAGGAGTCACGCAATTTTTTTCGATTTCTAAGAAGAACATAGCTCAAATAGGTTTTTGCCTCTACTTATACTTTATAACTTTCAGATATTAAAAAGTGTACAGAATACCTGCTATTAATATTTTGTAAGAAGAATTTGTCTGGTTTTACTACAGCCGTCAGTTTATCAGGGGTTGCTAAGATATACGTTACGAAATACATAGCAGTCATTCCAAGATAGAAGAAAGTATCCCTTGCATGTGTCCAAATTGCATGCATGCATTGGTTGGTTGGCGGCGGGGTTTATGGCAAACAATGGGGCGGGTTTAGGAATAGGGGGTTGGGTTTAGGACTTAGGGGGTGGGGTTTGGAATTTAGGAATGAATTCCTGCTCTCTGGATGTGGCTTATCATTGTCTTTATCATTGTCGATGTTGAAATAGAAGCAGACGAAGAAGAAGTAGTATTAATGGAGACTTTTTTAATggagaaattttatttttaattttactttttattttatattattgttttctttagtggctgcgt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0033169 histone H3-K9 demethylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005730 nucleolus cellular_component
GO:0005506 iron ion binding molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0032454 histone demethylase activity (H3-K9 specific) molecular_function

KEGG:

id description
K19414 PHF2, JHDM1E; lysine-specific demethylase PHF2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258175 lncRNA downstream 16627 16705878 ~ 16722660 (-) True G190435
TU258173 lncRNA downstream 52665 16686156 ~ 16686622 (-) True G190433
TU258170 lncRNA downstream 80793 16658221 ~ 16658494 (-) True G190430
TU258166 lncRNA downstream 161642 16569628 ~ 16577645 (-) False ptpdc1
XR_002651610.1 lncRNA downstream 173282 16560501 ~ 16566005 (-) True LOC111195385
TU258192 lncRNA upstream 24571 16818801 ~ 16819610 (-) True G190446
TU258196 lncRNA upstream 43393 16837623 ~ 16944365 (-) False G190449
TU258195 lncRNA upstream 86278 16880508 ~ 16897083 (-) False G190449
TU258198 lncRNA upstream 86278 16880508 ~ 16944365 (-) True G190449
TU258208 lncRNA upstream 118764 16912994 ~ 16947073 (-) False G190453
XM_022682463.1 mRNA downstream 139970 16569623 ~ 16599317 (-) True ptpdc1
XM_022682467.1 mRNA downstream 182529 16520544 ~ 16556758 (-) True wnt7a
XM_022682469.1 mRNA downstream 600994 15869135 ~ 16138293 (-) False LOC103029523
XM_022682468.1 mRNA downstream 600994 15869135 ~ 16138293 (-) True LOC103029523
XM_022682459.1 mRNA downstream 888096 15846861 ~ 15851191 (-) True LOC103030277
XM_022682837.1 mRNA upstream 2638 16796868 ~ 16827437 (-) True fam120a
XM_022682470.1 mRNA upstream 39620 16833850 ~ 16869461 (-) True cass4
XM_022682471.1 mRNA upstream 81178 16875408 ~ 16884596 (-) True cstf1
XM_022682838.1 mRNA upstream 92481 16886711 ~ 16954694 (-) True LOC103036783
XM_022682473.1 mRNA upstream 171986 16966216 ~ 17007699 (-) False LOC103037092
TU258141 other downstream 278359 16402791 ~ 16460928 (-) True G190405
TU257808 other downstream 1282022 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 1417116 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 3662771 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 4119721 12614912 ~ 12619566 (-) True G189335
XR_002651612.1 other upstream 39620 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 394435 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 423091 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 1345133 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other upstream 1373188 18167418 ~ 18175117 (-) False LOC111195395

Expression Profile