RNA id: XM_022682467.1


Basic Information

Item Value
RNA id XM_022682467.1
length 4774
RNA type mRNA
GC content 0.40
exon number 4
gene id wnt7a
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16520544 ~ 16556758 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaggaggaggagcaaaAAGGGAGCGGAGGGAGAGATAAAAGCTGGTAaaagcagcagagcttcagctaCAGGATTAAACACTGCACTGAGCTGAGCTGCAGCGCTACTACTGcattagtattattagagtATACAACTCGAACTGCGCTGAGATCTTCTCAGATCTTCTTAGATCTTCTCAGAACATTTAGATCGGACCTGGATTTCttctattttcttctttttcacaGATATATAGAGTATAAAGTGAGTGATAGTATCAGTTTCAGCTTTTTTTACATGGTGGAACAGAGCTACTACAGCTCTATATTTACACCTCTGCGCTCTCTCTCCGGATAATTCCACACCTTTAACCAGAGCCCGAGCTCCATCTGAACACGCCCTGACACATCAGATACGGGGAGCCGGGGGAAGCGACTCCCAGAGCCCGGCTGGACTGATtcacatgctgctgctgctgctgctgctggaggagaacgGAGATACGAGGTTTatcataaaacaataaatcaaaaaaattaaaaataaaaataacatcataacaAAATTCCAACATGAGCAGGAAAACTCGCCGCTGGATTTTTCACATCTTCCTCTGCCTGGGGATTATTTACCTGAAAATTGGCGGTTTCTCGTCCGTGGTGGCTCTGGGAGCGAGTATTATCTGTAATAAAATCCCCGGCCTGGCTCCCCGACAGAGGACTATCTGCCAGAGCCGACCCGACGCCATCATAGTGATCGGAGAGGGAGCTCAGATGGGGAtcaatgagtgccagttccagtTCAGGAACGGCCGCTGGAACTGCTCAGCGCTCGGGGAGAGAACTGTCTTTGGAAAAGAGCTGAAAGTGGGGAGTAAGGAGGCTGCTTTCACCTACGCCATCATCTCGGCGGGCGTGGCCCACGCCATCACGGCAGCCTGCACTCGGGGAACGCTGAGCGGCTGCGGCTGCGATAAGGAGAAACAGGGTTTCTATAATCAGGACGAGGGCTGGAAGTGGGGCGGCTGCTCCGCCGACATCCGTTACGGCCTCAGCTTCTCCAAGGTGTTCGTAGACGCCCGAGAGATCAAGCAGAACGCCAGGACTCTTATGAACCTTCATAACAACGAAGTAGGACGTAAGCTCCTGGAGAAGAACATGCGACTGGAGTGTAAGTGCCACGGCGTCTCCGGCTCCTGCACCACCAAGACCTGCTGGACGACGCTCCCGAAGTTCCGGCAGCTCGGCTACATCCTGAAGGACAAGTACTTCCAGGCGGTTCACGTGGAACCGGTCCGAGCGAGCCGAAACAAGCGGCCCAAGTTCCTGAAGATCAAAAAACCATATTCCTACAGAAAGCCCATGGACACGGACCTGGTCTACATCGAGAAATCTCCCAACTACTGCGAGGCGGATCCCATCACCGGCAGCATGGGGACGCAGGGGCGTATCTGCAACAAGACGGCGCACCAAGCCAACAGCTGCGACCTGATGTGCTGTGGGCGGGGCTACAACACGCACCAGTACTCGCGGGTTTGGCAGTGCAACTGCAAGTTCCTGTGGTGCTGCTACGTCAAGTGCAACACCTGCAGCGAGAGGACAGAGGTGTACACGTGCAAATGATCCAAATGAATTCATTCATTCGTTTAATTTACTCAAGAAAACATCGATACGGTGCTTTCTCGGACGTATCGCGTGGAAGTGTTGGAGGGTCTGGAGGGTCTGAGAAGGTCAGAATCATGGGAGCATCATCGGGGTACAGCCTACTGGGTACTGAGTGATGTAGATCCATGGCTTTAAGGCTCCTCCTTAAGAAAGGAGAAACAACTTGTTTGCACAAGATGAGTTCTCCGTTGTTGGGTCTCCATTGTTGGCCAGGGaccatacatatacagtatgtacagtagaGTTGGAGTTGGAGCATGGAGGAGGTCCAATAGAAGGAACAAGAGATCCTTGGTGCAGATCTTTTGCCTTGGCACCAATGGACCAGTGCTCCAATGCACCAATGGACCAATGGACCAATGGACGTCTTGCAAATATGGCCAACAATGATGGTTCGACTCCAAGGAAATTCCAGGAAAGTTTGTTTTTTGCGacaataagaaagaaaaaatgctgGGAAACTTGGGAAAGTTGGGAAAGTTGAGAAAAGTTGGAACAGTTGGTCCTTGGGCGTTGACCTTGGCCACATCTGGAGATCCTTATTAGTGAATGAGCTGCTTAGTGAACCTTTAATGGaccttaaaacaaaaataatacagtaattgtGAACTGGATGGATAGTTTTGGAtcgttttattcttattctgaTGGACTTCCGATGGAAAGCGTACTGTTTGTGGATGACGACGGtgatatttaactttttatttagaGACAGAAAGgctaatattaatttatttaataataaaactactGATTTTGTCTTTCGTTACGTGAGTTACAGTCCGTTTTCACCATTAAAtattgtgtgtaattgtgttccTGTGTATGTAACCAGCTCTCACACTCGATCCCACGAGCCTGTGCTTTataattaatgtaaaacaaacatcaaacaaacagacaaacaaacacaatacattacattgtgCATTATGTATCACTGGTGCACGTAAACGTTCTAAACGttgtgtaaagttttaagttttgcaCCATTGAGTTTAGttgaaacttgttttttattttgcctcTACTGTGTTTTGTTCTTCCACCTCAGCTCTCAGCACAATGcaatttctatatatatatatatatatttctatacataaatatgtatttatatttaaagaaaaaatatacactggaaatatcaatgaaaaaaaaccATTCCTCTTGAAGGCTATCTCCTTTTAAAATGAACCAATGAAACGTATTCCCCCattaatgtgaatgtgaatccacacacactgcaaaaaaacaaaaacaacaaaatcctagcaagtgaaattaattttaatactaaTTTTAATGCAATTCCTTGAAAAACAGCATtgagtgtaagtgtaagattattgTGCATACTTTAGGAACAACGGAGTTAAACATaatgaaacataaaacataagctATCTTGTTTTAGgtcatttaaacttaaaataagcatGAAAAGACACCCTTTAGGatataaaataagagatttttACATGATTCAAGACTTACTTTGAGGATTTTAAGACTTTGCGATTGCTCATTTTGGAACAACACCCTTAATCAGTCTCACGTAGAATTTCCACCATGGTTTAAGtgatttgaactcaaaatatgCATAAAAAGACACCAATTAATCTATAAATCTTATATTTTAACGTGATTAAAGACTTACTTTGAGGATTTCAAGACTttgtgattgcttattttaggaacaaTAATCTTAATCAGTTTTACATAGAATTCTTCACttgttttaagtgatttaaactcaaaattagcataataaatacatacttTGAGGATTTTGAGACTTggtgattgcttattttaagaaaaaacaacTTTAATCAGTCTCACTTAGAATTTCCGCCttgttttaagtcatttaaactcaaaataagcataaaaagttattttcttgATTCTTGAGTCCAAATTTAAGATATAAATGTGAGATTTTGACTTGATTTAAGACTTAGATCAAGGATTTTGAGATGCAtcttattttagtaaaatctgcTTAACAATTAAAactagatatatatataatttctagTTTTAAATTCcaatagatgttttttttgcagtgtagagtGCACTAAATTCATGTTAATGACAGTAGATGAGTTATATTATTTGGACCAGTGTTGTTCACTGATTACTACGGTACAAAAACCCAACAATGATCCAAATTATGacccaaattatttaattgacaCGGTTTAACCTCTTCAAAAAGCGACAAATTTAACGATGAGTTCATTTTGTAAGGATTTAGCCTAAAATCAGGAGATTTCTCCACATGCTACTGATCCTGAGCGCTGAGGTCACTGatactgatattaaaatataaatatataactttcTTTTTGCTGCTAGTCATCTGGTCATTTCTAGGCTAAAACGTGGAAACGGTTGAGTCTTTTAAGTTGAATATAGTGCTTTTAAAACGTGAACGTGGGCTAATATGGTATCACACAGTTTAACAGAATATATTTTGCGAGAGATTATTTTtatatgagtgttttttatttatttgtgctgTAAAAAAACGTCCTGCTCCCcgattttacttttactattcaTAGATAACGTAGGTGGAAATTAGTAATCTAAGCTATAAAACTGCATGGGGTCGATAATTTTATGGTACCAGcttgattggttaattggtttgATGTTACTGGCTCTCAAAGCTCAacctaaaacattaaaaacagtactacagtaattcagtaattgCTTAATTAGTAAAAGTAATTGGTTAAAAATGGATTAGAAAGTTCAGTCGcagtttttgtttcatttttaacagtttttagcAGTTTATTGACAGTGGTTCTGCATACAGAACCAATAAGcgaaaagtaaaattaaaactgGACGAATATCGGTACTataagtcaaatttaatgacGATTTATTGATTTTAACCAAAGAACAACTGAATTTGGAGGTGGCTCTTCACTAAAAGTCATCCTCAACTTTGGTCCTATTGATCCTACCTGACAACGAACTTTGAGTTCAAGTGACGTTTTTGCCAAACTGGTCGTTCTGCATGCTTATAATTGTCATAACTGAGTTGTGCATTATGTTTTGAACagtgttaataataaaagtcaCCTCAGCAGTTTGCA

Function

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0045165 cell fate commitment biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00572 WNT7; wingless-type MMTV integration site family, member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258153 lncRNA downstream 35007 16456537 ~ 16485537 (-) True G190416
TU258142 lncRNA downstream 113611 16345701 ~ 16406933 (-) False G190405
TU258140 lncRNA downstream 113611 16396305 ~ 16406933 (-) False G190405
XR_002651611.1 lncRNA downstream 122515 16397322 ~ 16398029 (-) False LOC111195386
TU258136 lncRNA downstream 122540 16304718 ~ 16398004 (-) True LOC111195386
XR_002651610.1 lncRNA upstream 3743 16560501 ~ 16566005 (-) True LOC111195385
TU258166 lncRNA upstream 12870 16569628 ~ 16577645 (-) False ptpdc1
TU258170 lncRNA upstream 101463 16658221 ~ 16658494 (-) True G190430
TU258173 lncRNA upstream 129398 16686156 ~ 16686622 (-) True G190433
TU258174 lncRNA upstream 135071 16691829 ~ 16748387 (-) True G190434
XM_022682469.1 mRNA downstream 382251 15869135 ~ 16138293 (-) False LOC103029523
XM_022682468.1 mRNA downstream 382251 15869135 ~ 16138293 (-) True LOC103029523
XM_022682459.1 mRNA downstream 669353 15846861 ~ 15851191 (-) True LOC103030277
XM_007243528.2 mRNA downstream 686823 15832088 ~ 15833721 (-) True LOC103047460
XM_007233856.2 mRNA downstream 695305 15814220 ~ 15825239 (-) True LOC103030908
XM_022682463.1 mRNA upstream 12865 16569623 ~ 16599317 (-) True ptpdc1
XM_022682461.1 mRNA upstream 182529 16739287 ~ 16794230 (-) False phf2
XM_022682462.1 mRNA upstream 182529 16739287 ~ 16794230 (-) False phf2
XM_022682460.1 mRNA upstream 182529 16739287 ~ 16794230 (-) True phf2
XM_022682837.1 mRNA upstream 240110 16796868 ~ 16827437 (-) True fam120a
TU258141 other downstream 59616 16402791 ~ 16460928 (-) True G190405
TU257808 other downstream 1063279 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 1198373 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 3444028 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 3900978 12614912 ~ 12619566 (-) True G189335
XR_002651612.1 other upstream 277092 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 631907 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 660563 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 1582605 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other upstream 1610660 18167418 ~ 18175117 (-) False LOC111195395

Expression Profile